Variant report

Variant	rs932029
Chromosome Location	chr15:57792130-57792131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57627655..57630463-chr15:57790410..57793260,2	K562	blood:
2	chr15:57785599..57788871-chr15:57789912..57793304,3	MCF-7	breast:
3	chr15:57790627..57792700-chr15:57796168..57798230,2	MCF-7	breast:
4	chr11:9482544..9483068-chr15:57791717..57792599,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10220805	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10518923	0.92[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs10775165	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs10851614	0.92[CEU][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs10851615	0.83[JPT][hapmap]
rs10851616	0.83[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs10851617	0.85[EUR][1000 genomes]
rs11071323	0.92[CEU][hapmap];0.83[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs11071324	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11071325	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11071326	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11630712	0.84[EUR][1000 genomes]
rs11630713	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11630740	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs11631943	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs11634739	0.85[CEU][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs11637220	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs11637265	0.92[EUR][1000 genomes]
rs11857299	0.81[CHB][hapmap]
rs12323972	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs12437888	0.92[CEU][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs12438901	0.91[EUR][1000 genomes]
rs12439099	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs12439126	0.84[EUR][1000 genomes]
rs12440928	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs12441608	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12442969	0.91[EUR][1000 genomes]
rs12592077	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs12593650	0.83[EUR][1000 genomes]
rs12593685	0.83[EUR][1000 genomes]
rs12593721	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs12594455	0.89[EUR][1000 genomes]
rs12594504	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs12595135	0.85[CEU][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs12595169	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs1280387	0.85[EUR][1000 genomes]
rs1666567	0.84[TSI][hapmap]
rs16977531	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs16977534	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs16977558	0.85[CEU][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs16977560	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs16977561	0.85[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs16977567	0.88[TSI][hapmap]
rs17239770	0.81[CHB][hapmap]
rs1980048	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2087981	0.91[EUR][1000 genomes]
rs2131740	0.85[CEU][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs2172613	0.85[CEU][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs2172614	0.84[TSI][hapmap]
rs2414510	0.80[EUR][1000 genomes]
rs2922224	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2942043	0.92[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs4545749	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs58161678	0.91[EUR][1000 genomes]
rs58253526	0.91[EUR][1000 genomes]
rs7164486	0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs7496403	0.84[EUR][1000 genomes]
rs932028	0.92[CEU][hapmap];0.83[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs955206	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs966693	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045620	chr15:57680733-57804237	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2763103	chr15:57781577-57799765	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57771000-57795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:57778200-57798400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:57779000-57794200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:57779000-57794400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:57779000-57797600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:57779000-57798200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:57779400-57794200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:57779400-57800800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:57787200-57802000	Weak transcription	Aorta	Aorta
10	chr15:57787600-57793000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:57787800-57793200	Weak transcription	NHDF-Ad	bronchial
12	chr15:57788200-57793400	Weak transcription	HUVEC	blood vessel
13	chr15:57788200-57797600	Enhancers	Fetal Heart	heart
14	chr15:57788400-57793600	Weak transcription	Ovary	ovary
15	chr15:57788600-57792800	Weak transcription	Fetal Kidney	kidney
16	chr15:57789200-57793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:57789400-57796200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:57789800-57801600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:57790000-57792200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:57790000-57792200	Weak transcription	Right Atrium	heart
21	chr15:57790000-57792400	Weak transcription	Right Ventricle	heart
22	chr15:57790000-57793400	Weak transcription	Liver	Liver
23	chr15:57790000-57794400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:57790000-57794800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:57790000-57796800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:57790000-57797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:57790000-57808600	Weak transcription	Fetal Brain Male	brain
28	chr15:57790200-57793400	Weak transcription	Esophagus	oesophagus
29	chr15:57790200-57793400	Weak transcription	Placenta	Placenta
30	chr15:57790200-57793600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:57790200-57793800	Weak transcription	Fetal Intestine Large	intestine
32	chr15:57790200-57794200	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:57790200-57794400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:57790200-57794400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:57790200-57797600	Weak transcription	Brain Anterior Caudate	brain
36	chr15:57790200-57799000	Enhancers	HepG2	liver
37	chr15:57790200-57801400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:57790400-57792200	Weak transcription	Fetal Stomach	stomach
39	chr15:57790400-57793200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:57790400-57793800	Weak transcription	Left Ventricle	heart
41	chr15:57790400-57794000	Weak transcription	Fetal Lung	lung
42	chr15:57790400-57795600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:57790600-57792200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:57790600-57793200	Weak transcription	Stomach Mucosa	stomach
45	chr15:57790600-57793600	Weak transcription	Fetal Intestine Small	intestine
46	chr15:57791000-57792200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:57791000-57793200	Weak transcription	Gastric	stomach
48	chr15:57791200-57795200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:57791400-57793600	Weak transcription	Lung	lung
50	chr15:57791400-57795200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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