Variant report

Variant	rs1667744
Chromosome Location	chr3:24296088-24296089
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24295617..24298486-chr3:24535596..24538208,2	MCF-7	breast:
2	chr3:23958551..23960055-chr3:24295858..24297898,2	K562	blood:
3	chr3:24292380..24293972-chr3:24295078..24296685,2	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000197885	Chromatin interaction
ENSG00000228791	Chromatin interaction
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11718500	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1505300	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1667745	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1667746	0.87[EUR][1000 genomes]
rs1667750	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1700939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7627249	0.93[EUR][1000 genomes]
rs826226	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs826227	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs826228	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9832292	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv521447	chr3:24292825-24299505	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv528341	chr3:24292825-24299505	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv519524	chr3:24294381-24299505	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24283600-24297000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24284200-24300600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:24284600-24300400	Weak transcription	Pancreas	Pancrea
5	chr3:24285000-24296200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:24285200-24299600	Weak transcription	Left Ventricle	heart
7	chr3:24286800-24299200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:24294800-24296600	Enhancers	Colon Smooth Muscle	Colon
9	chr3:24294800-24297800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:24295000-24296400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:24295200-24297000	Weak transcription	Psoas Muscle	Psoas
12	chr3:24295200-24298000	Weak transcription	Right Ventricle	heart
13	chr3:24295200-24299600	Weak transcription	Aorta	Aorta
14	chr3:24295200-24299600	Weak transcription	Fetal Intestine Small	intestine
15	chr3:24295400-24297000	Weak transcription	Fetal Stomach	stomach
16	chr3:24295400-24300000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:24295400-24306400	Weak transcription	HepG2	liver
18	chr3:24295600-24297200	Enhancers	NHDF-Ad	bronchial
19	chr3:24295800-24296200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:24295800-24296600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:24295800-24296600	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:24295800-24296800	Enhancers	HSMM	muscle
23	chr3:24295800-24296800	Enhancers	Osteobl	bone
24	chr3:24295800-24297000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:24295800-24297000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:24295800-24297200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:24295800-24297200	Enhancers	HMEC	breast
28	chr3:24295800-24297400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:24295800-24298200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:24296000-24296200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr3:24296000-24296600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:24296000-24296800	Enhancers	NHLF	lung
33	chr3:24296000-24297000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:24296000-24297000	Bivalent Enhancer	NH-A	brain

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