Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24284818..24287512-chr3:24293603..24295471,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11718500	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1505300	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1667744	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1667745	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1667746	0.85[EUR][1000 genomes]
rs1667750	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1700939	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2885233	0.81[ASN][1000 genomes]
rs7627249	0.94[EUR][1000 genomes]
rs826226	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931813	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv521447	chr3:24292825-24299505	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv528341	chr3:24292825-24299505	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv519524	chr3:24294381-24299505	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24283600-24297000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24284200-24300600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:24284400-24295200	Weak transcription	Fetal Stomach	stomach
5	chr3:24284600-24295200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:24284600-24300400	Weak transcription	Pancreas	Pancrea
7	chr3:24285000-24296200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:24285200-24299600	Weak transcription	Left Ventricle	heart
9	chr3:24286800-24299200	Weak transcription	Adipose Nuclei	Adipose
10	chr3:24293600-24295000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr3:24294200-24295000	Weak transcription	Psoas Muscle	Psoas
12	chr3:24294800-24295000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:24294800-24295200	Enhancers	Aorta	Aorta
14	chr3:24294800-24295200	Enhancers	Fetal Intestine Small	intestine
15	chr3:24294800-24295200	Enhancers	Right Ventricle	heart
16	chr3:24294800-24295200	Enhancers	NHDF-Ad	bronchial
17	chr3:24294800-24295400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:24294800-24295400	Enhancers	HepG2	liver
19	chr3:24294800-24295400	Enhancers	HMEC	breast
20	chr3:24294800-24296600	Enhancers	Colon Smooth Muscle	Colon
21	chr3:24294800-24297800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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