Variant report

Variant	rs1667750
Chromosome Location	chr3:24302975-24302976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24301681..24305392-chr3:24534206..24538059,6	K562	blood:
2	chr3:24298149..24300449-chr3:24302708..24304769,2	K562	blood:
3	chr3:24297598..24300449-chr3:24300690..24305218,5	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1077633	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs11718500	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1505300	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1667744	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1667745	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1667746	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1667747	0.86[EUR][1000 genomes]
rs1667751	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs1700939	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7627249	0.85[EUR][1000 genomes]
rs826226	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs826227	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs826228	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs826235	0.82[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24295400-24306400	Weak transcription	HepG2	liver
2	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24299800-24304000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:24301000-24303200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:24301000-24303200	Weak transcription	Fetal Lung	lung
6	chr3:24301000-24304200	Weak transcription	Right Atrium	heart
7	chr3:24301000-24304600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:24301000-24305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:24301400-24304000	Enhancers	Fetal Intestine Large	intestine
10	chr3:24302000-24303400	Weak transcription	Fetal Heart	heart
11	chr3:24302000-24304400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:24302200-24303400	Enhancers	Liver	Liver
13	chr3:24302200-24305600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr3:24302200-24305800	Enhancers	K562	blood
15	chr3:24302200-24313800	Weak transcription	Stomach Mucosa	stomach
16	chr3:24302400-24303200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:24302400-24304000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:24302600-24303000	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:24302600-24303800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:24302600-24306000	Weak transcription	Fetal Intestine Small	intestine
21	chr3:24302600-24310800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:24302600-24312000	Weak transcription	Aorta	Aorta
23	chr3:24302800-24307800	Weak transcription	Psoas Muscle	Psoas

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