Variant report

Variant	rs1077633
Chromosome Location	chr3:24305701-24305702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24305304..24306760-chr3:24623707..24624748,5	MCF-7	breast:
2	chr3:24304507..24306976-chr3:24398262..24401260,2	MCF-7	breast:
3	chr3:24108403..24110217-chr3:24304127..24305953,2	K562	blood:
4	chr3:24049320..24050973-chr3:24303692..24306625,2	K562	blood:
5	chr3:24305546..24307619-chr3:24343999..24346600,2	MCF-7	breast:
6	chr3:24303622..24310321-chr3:24533981..24541253,19	MCF-7	breast:
7	chr3:24305621..24308372-chr3:24314750..24317719,2	K562	blood:
8	chr3:24305596..24307842-chr3:24555614..24558189,2	K562	blood:
9	chr3:24299984..24301754-chr3:24305650..24307661,2	K562	blood:
10	chr3:24305072..24307020-chr3:24526305..24529102,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1505300	0.81[EUR][1000 genomes]
rs1667745	0.85[EUR][1000 genomes]
rs1667746	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1667747	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1667750	0.83[CEU][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs1667751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7627249	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs826235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs826239	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24295400-24306400	Weak transcription	HepG2	liver
2	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24302200-24305800	Enhancers	K562	blood
4	chr3:24302200-24313800	Weak transcription	Stomach Mucosa	stomach
5	chr3:24302600-24306000	Weak transcription	Fetal Intestine Small	intestine
6	chr3:24302600-24310800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:24302600-24312000	Weak transcription	Aorta	Aorta
8	chr3:24302800-24307800	Weak transcription	Psoas Muscle	Psoas
9	chr3:24303400-24305800	Enhancers	Fetal Heart	heart
10	chr3:24304000-24305800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:24304000-24310800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:24304400-24306200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:24305400-24305800	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:24305600-24305800	Enhancers	Fetal Lung	lung
15	chr3:24305600-24310400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:24305600-24312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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