Variant report

Variant	rs826235
Chromosome Location	chr3:24311372-24311373
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1077633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1505301	0.85[AMR][1000 genomes]
rs1667745	0.82[EUR][1000 genomes]
rs1667746	0.85[EUR][1000 genomes]
rs1667747	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1667750	0.82[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1700936	0.84[ASN][1000 genomes]
rs2360956	0.85[ASN][1000 genomes]
rs2360957	0.85[ASN][1000 genomes]
rs7627249	0.80[EUR][1000 genomes]
rs826239	0.94[GIH][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24302200-24313800	Weak transcription	Stomach Mucosa	stomach
3	chr3:24302600-24312000	Weak transcription	Aorta	Aorta
4	chr3:24305600-24312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:24306600-24314800	Weak transcription	A549	lung
6	chr3:24308400-24311800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:24310400-24312200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:24310600-24311400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:24310800-24312000	Weak transcription	Fetal Intestine Large	intestine
10	chr3:24310800-24313000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:24310800-24314800	Enhancers	Fetal Intestine Small	intestine
12	chr3:24311000-24311800	Weak transcription	Liver	Liver
13	chr3:24311000-24335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:24311200-24313000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:24311200-24313000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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