Variant report

Variant	rs1667751
Chromosome Location	chr3:24303417-24303418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24301681..24305392-chr3:24534206..24538059,6	K562	blood:
2	chr3:24298149..24300449-chr3:24302708..24304769,2	K562	blood:
3	chr3:24297598..24300449-chr3:24300690..24305218,5	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1077633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11718500	0.80[EUR][1000 genomes]
rs1667745	0.83[EUR][1000 genomes]
rs1667746	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1667747	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1667750	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs2360956	0.90[AFR][1000 genomes]
rs2360957	0.90[AFR][1000 genomes]
rs7627249	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs826235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs826239	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24295400-24306400	Weak transcription	HepG2	liver
2	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24299800-24304000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:24301000-24304200	Weak transcription	Right Atrium	heart
5	chr3:24301000-24304600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:24301000-24305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:24301400-24304000	Enhancers	Fetal Intestine Large	intestine
8	chr3:24302000-24304400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:24302200-24305600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:24302200-24305800	Enhancers	K562	blood
11	chr3:24302200-24313800	Weak transcription	Stomach Mucosa	stomach
12	chr3:24302400-24304000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:24302600-24303800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:24302600-24306000	Weak transcription	Fetal Intestine Small	intestine
15	chr3:24302600-24310800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:24302600-24312000	Weak transcription	Aorta	Aorta
17	chr3:24302800-24307800	Weak transcription	Psoas Muscle	Psoas
18	chr3:24303000-24305400	Enhancers	Colon Smooth Muscle	Colon
19	chr3:24303200-24303600	Enhancers	Fetal Lung	lung
20	chr3:24303200-24304000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:24303200-24304600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:24303400-24303600	Weak transcription	Liver	Liver
23	chr3:24303400-24305800	Enhancers	Fetal Heart	heart

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