Variant report

Variant	rs1668353
Chromosome Location	chr7:38007650-38007651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12701600	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1376260	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1376261	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1450849	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1450850	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1616485	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1619560	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1621407	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1668348	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1668354	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1668357	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1668361	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1668362	0.98[ASN][1000 genomes]
rs1668363	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1717732	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1717737	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1717741	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1717742	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1717744	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1823522	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1901197	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1993055	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2167267	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2246953	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2598086	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2598090	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2598093	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2722274	0.85[ASN][1000 genomes]
rs2722278	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2722279	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2722283	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722287	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2722288	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4723719	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs976798	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:37992200-38017600	Weak transcription	Ovary	ovary
2	chr7:37992600-38026800	Weak transcription	Pancreas	Pancrea
3	chr7:37997600-38010600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:38004400-38012400	Weak transcription	Aorta	Aorta
5	chr7:38006000-38011000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:38007200-38008400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:38007400-38008200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:38007600-38008000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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