Variant report

Variant	rs1717742
Chromosome Location	chr7:38005001-38005002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12701600	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376260	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1376261	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1450849	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1450850	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1616485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1619560	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1621407	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1668348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1668353	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1668354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1668357	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1668361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1668362	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1668363	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1717732	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717741	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823522	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1901197	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1993055	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2167267	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2246953	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2598086	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2598090	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2598093	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722274	0.86[ASN][1000 genomes]
rs2722278	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2722279	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2722283	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2722287	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722288	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4723719	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:37992200-38017600	Weak transcription	Ovary	ovary
2	chr7:37992600-38026800	Weak transcription	Pancreas	Pancrea
3	chr7:37993000-38007600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:37993800-38007400	Weak transcription	A549	lung
5	chr7:37997600-38010600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:38004400-38012400	Weak transcription	Aorta	Aorta
7	chr7:38005000-38006000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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