Variant report

Variant	rs2722279
Chromosome Location	chr7:37991129-37991130
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12701600	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1376260	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1376261	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1450849	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1450850	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1616485	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1619560	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1621407	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1668348	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1668353	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1668354	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1668357	0.94[EUR][1000 genomes]
rs1668361	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1668362	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1668363	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1717732	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1717737	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1717741	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1717742	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1717744	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1823522	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901197	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1993055	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2167267	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2246953	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2598086	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2598090	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2598093	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722274	0.93[ASN][1000 genomes]
rs2722278	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722283	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2722287	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722288	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4723719	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs976798	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:37964200-37992600	Weak transcription	Hela-S3	cervix
2	chr7:37978400-37994200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:37982800-37992400	Weak transcription	Spleen	Spleen
4	chr7:37984000-37993200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:37984200-37993600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:37984400-37995000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:37984600-37992000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:37984600-37992000	Weak transcription	Pancreas	Pancrea
9	chr7:37984800-37993600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:37986000-37993600	Weak transcription	Fetal Brain Female	brain
11	chr7:37986800-37993000	Strong transcription	Aorta	Aorta
12	chr7:37987400-37992800	Weak transcription	Fetal Brain Male	brain
13	chr7:37987400-37994200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:37987400-37997200	Weak transcription	Psoas Muscle	Psoas
15	chr7:37987800-37992400	Weak transcription	Left Ventricle	heart
16	chr7:37987800-37993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:37987800-37993800	Strong transcription	A549	lung
18	chr7:37987800-37996000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:37988000-37991400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:37988000-37993400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr7:37988400-37991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:37988400-37991600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:37988400-37992400	Strong transcription	Adipose Nuclei	Adipose
24	chr7:37988400-37993600	Strong transcription	HSMMtube	muscle
25	chr7:37988600-37992400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:37988600-37993000	Strong transcription	Fetal Muscle Leg	muscle
27	chr7:37988600-37993400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:37988600-37993600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:37988800-37992400	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:37989000-37993600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:37989400-37993400	Weak transcription	Lung	lung
32	chr7:37989400-37994600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:37989400-37998800	Weak transcription	Thymus	Thymus
34	chr7:37989800-37992200	Strong transcription	Ovary	ovary
35	chr7:37989800-37993800	Strong transcription	HSMM	muscle
36	chr7:37990000-37992200	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:37990000-37992600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr7:37990200-37993200	Weak transcription	Primary T cells from cord blood	blood
39	chr7:37990200-37996000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:37990400-37992600	Weak transcription	HepG2	liver
41	chr7:37990400-37993000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr7:37990600-37992800	Strong transcription	Liver	Liver
43	chr7:37990800-37992400	Genic enhancers	Dnd41	blood

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