Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22874201..22876969-chr3:22880901..22883798,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs167167	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs183319	0.83[EUR][1000 genomes]
rs184174	0.89[AFR][1000 genomes]
rs188435	0.83[EUR][1000 genomes]
rs294783	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs294784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs294788	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs294791	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs294792	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs294794	0.83[EUR][1000 genomes]
rs294795	0.83[EUR][1000 genomes]
rs296154	0.83[EUR][1000 genomes]
rs296156	0.83[EUR][1000 genomes]
rs296157	0.80[EUR][1000 genomes]
rs296158	0.80[EUR][1000 genomes]
rs296159	0.83[EUR][1000 genomes]
rs296160	0.82[EUR][1000 genomes]
rs296167	0.81[EUR][1000 genomes]
rs296169	0.82[EUR][1000 genomes]
rs296170	0.82[EUR][1000 genomes]
rs298418	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs298419	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs298421	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs298422	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs298423	0.89[AFR][1000 genomes]
rs62251443	0.84[ASN][1000 genomes]
rs641627	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22876200-22881400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:22880000-22883200	Weak transcription	Aorta	Aorta

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