Variant report
| Variant | rs294791 |
|---|---|
| Chromosome Location | chr3:22873884-22873885 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs167165 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs167167 | 0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs177106 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs183319 | 0.86[EUR][1000 genomes] |
| rs188435 | 0.86[EUR][1000 genomes] |
| rs294783 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs294784 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs294788 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs294792 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs294794 | 0.86[EUR][1000 genomes] |
| rs294795 | 0.86[EUR][1000 genomes] |
| rs296154 | 0.86[EUR][1000 genomes] |
| rs296155 | 0.82[EUR][1000 genomes] |
| rs296156 | 0.86[EUR][1000 genomes] |
| rs296157 | 0.83[EUR][1000 genomes] |
| rs296158 | 0.83[EUR][1000 genomes] |
| rs296159 | 0.86[EUR][1000 genomes] |
| rs296160 | 0.85[EUR][1000 genomes] |
| rs296167 | 0.84[EUR][1000 genomes] |
| rs296169 | 0.85[EUR][1000 genomes] |
| rs296170 | 0.85[EUR][1000 genomes] |
| rs298418 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs298419 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs298421 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs298422 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62251443 | 0.86[ASN][1000 genomes] |
| rs641627 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460477 | chr3:22532660-22920246 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv589941 | chr3:22532660-22920246 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014828 | chr3:22554271-23033498 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv1008306 | chr3:22762892-23026548 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv999013 | chr3:22788951-22880732 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv1014275 | chr3:22796228-22880732 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:22866800-22877600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
