Variant report

Variant	rs167167
Chromosome Location	chr3:22876486-22876487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs167165	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177106	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs183319	0.87[EUR][1000 genomes]
rs188435	0.87[EUR][1000 genomes]
rs294783	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs294784	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs294788	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294791	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs294792	0.86[EUR][1000 genomes]
rs294794	0.87[EUR][1000 genomes]
rs294795	0.87[EUR][1000 genomes]
rs296154	0.87[EUR][1000 genomes]
rs296155	0.83[EUR][1000 genomes]
rs296156	0.87[EUR][1000 genomes]
rs296157	0.84[EUR][1000 genomes]
rs296158	0.84[EUR][1000 genomes]
rs296159	0.87[EUR][1000 genomes]
rs296160	0.85[EUR][1000 genomes]
rs296167	0.83[EUR][1000 genomes]
rs296169	0.85[EUR][1000 genomes]
rs296170	0.86[EUR][1000 genomes]
rs298418	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298419	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298421	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298422	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62251443	0.84[ASN][1000 genomes]
rs641627	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999013	chr3:22788951-22880732	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014275	chr3:22796228-22880732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22866800-22877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:22874600-22878400	Enhancers	Fetal Intestine Small	intestine
3	chr3:22875200-22877000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:22875200-22877400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:22875600-22878400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:22875800-22878400	Enhancers	Fetal Lung	lung
7	chr3:22876000-22876600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:22876000-22876600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:22876000-22876600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:22876000-22876600	Enhancers	Fetal Intestine Large	intestine
11	chr3:22876000-22877200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:22876000-22877800	Enhancers	Stomach Mucosa	stomach
13	chr3:22876000-22878200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:22876200-22881400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:22876400-22876600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:22876400-22876800	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr3:22876400-22877000	Enhancers	A549	lung
18	chr3:22876400-22877200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:22876400-22877400	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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