Variant report

Variant	rs1674525
Chromosome Location	chr18:29905426-29905427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11873022	1.00[CHB][hapmap]
rs1661817	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689029	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs584111	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592430	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595794	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61438236	0.83[ASN][1000 genomes]
rs620723	1.00[CHB][hapmap]
rs622584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636391	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664545	0.87[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667247	0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs667604	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679614	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935558	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29891000-29905800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
4	chr18:29891200-29905600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
6	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
7	chr18:29897400-29909000	Weak transcription	Left Ventricle	heart
8	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
9	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr18:29898000-29906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr18:29898000-29906400	Weak transcription	Small Intestine	intestine
12	chr18:29898000-29906600	Weak transcription	Brain Angular Gyrus	brain
13	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
14	chr18:29898200-29915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr18:29899400-29905600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr18:29899800-29908400	Weak transcription	Stomach Mucosa	stomach
17	chr18:29900000-29905800	Weak transcription	Liver	Liver
18	chr18:29900000-29906000	Weak transcription	Fetal Heart	heart
19	chr18:29902600-29907400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr18:29902800-29905600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr18:29903400-29915800	Weak transcription	Fetal Brain Male	brain
22	chr18:29903600-29906400	Weak transcription	Psoas Muscle	Psoas
23	chr18:29904200-29913200	Weak transcription	Pancreas	Pancrea
24	chr18:29904200-29913800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr18:29904200-29915200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:29904400-29906400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr18:29904400-29906600	Weak transcription	Fetal Muscle Leg	muscle
28	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr18:29904600-29905600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:29904600-29905600	Weak transcription	Brain Substantia Nigra	brain
31	chr18:29904600-29905600	Weak transcription	Ovary	ovary
32	chr18:29904600-29906600	Weak transcription	Fetal Kidney	kidney
33	chr18:29904600-29906600	Weak transcription	Fetal Lung	lung
34	chr18:29904600-29917200	Weak transcription	HMEC	breast
35	chr18:29904800-29905600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr18:29904800-29905800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr18:29904800-29905800	Weak transcription	Brain Hippocampus Middle	brain
38	chr18:29904800-29906000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr18:29904800-29906200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr18:29904800-29906400	Weak transcription	HSMM	muscle
41	chr18:29904800-29906800	Enhancers	Adipose Nuclei	Adipose
42	chr18:29905000-29905800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr18:29905000-29906000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr18:29905000-29906200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr18:29905000-29906200	Weak transcription	Osteobl	bone
46	chr18:29905000-29908800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr18:29905200-29905800	Enhancers	HepG2	liver
48	chr18:29905400-29907000	Enhancers	Right Ventricle	heart
49	chr18:29905400-29907000	Enhancers	HSMMtube	muscle
50	chr18:29905400-29907800	Enhancers	Brain Anterior Caudate	brain

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