Variant report

Variant	rs664545
Chromosome Location	chr18:29901375-29901376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29899850..29902793-chr18:29909603..29911236,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1661817	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1674525	0.87[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689029	1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs584111	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592430	1.00[CEU][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595794	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61438236	0.83[ASN][1000 genomes]
rs622584	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs632368	0.82[TSI][hapmap]
rs636391	0.80[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs649408	0.82[TSI][hapmap]
rs661733	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667247	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs667604	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679614	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935558	0.83[ASN][1000 genomes]
rs8088892	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29889400-29904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:29890200-29902200	Weak transcription	Spleen	Spleen
4	chr18:29890400-29904000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:29891000-29905800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
7	chr18:29891200-29905600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr18:29893400-29903200	Weak transcription	Pancreas	Pancrea
9	chr18:29897200-29903200	Weak transcription	Psoas Muscle	Psoas
10	chr18:29897200-29903400	Weak transcription	Right Ventricle	heart
11	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
12	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
13	chr18:29897400-29909000	Weak transcription	Left Ventricle	heart
14	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
15	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr18:29897800-29901800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr18:29898000-29906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr18:29898000-29906400	Weak transcription	Small Intestine	intestine
19	chr18:29898000-29906600	Weak transcription	Brain Angular Gyrus	brain
20	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
21	chr18:29898200-29901400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:29898200-29902000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:29898200-29915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr18:29898400-29903800	Weak transcription	Fetal Kidney	kidney
25	chr18:29898400-29904000	Weak transcription	Brain Anterior Caudate	brain
26	chr18:29898600-29904000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr18:29898800-29901800	Weak transcription	Ovary	ovary
28	chr18:29898800-29903400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr18:29898800-29904000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr18:29898800-29904000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:29898800-29904000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr18:29898800-29904000	Weak transcription	Fetal Lung	lung
33	chr18:29898800-29904000	Weak transcription	Osteobl	bone
34	chr18:29899000-29903200	Weak transcription	HSMMtube	muscle
35	chr18:29899000-29904000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr18:29899000-29904000	Weak transcription	NHDF-Ad	bronchial
37	chr18:29899200-29901800	Weak transcription	Fetal Muscle Leg	muscle
38	chr18:29899200-29903800	Weak transcription	HSMM	muscle
39	chr18:29899200-29904000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr18:29899200-29904000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr18:29899200-29904000	Weak transcription	Brain Substantia Nigra	brain
42	chr18:29899400-29905600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr18:29899600-29903200	Weak transcription	Brain Hippocampus Middle	brain
44	chr18:29899600-29903400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr18:29899600-29904000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr18:29899800-29902000	Weak transcription	HepG2	liver
47	chr18:29899800-29903800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr18:29899800-29908400	Weak transcription	Stomach Mucosa	stomach
49	chr18:29900000-29903000	Weak transcription	Adipose Nuclei	Adipose
50	chr18:29900000-29905800	Weak transcription	Liver	Liver

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