Variant report

Variant	rs1678832
Chromosome Location	chr19:21512782-21512783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10410060	1.00[AFR][1000 genomes]
rs10415327	1.00[AFR][1000 genomes]
rs10416025	1.00[AFR][1000 genomes]
rs10422958	0.90[AFR][1000 genomes]
rs10424292	1.00[AFR][1000 genomes]
rs1613729	0.86[AFR][1000 genomes]
rs1678829	0.86[AFR][1000 genomes]
rs1762577	0.86[AFR][1000 genomes]
rs1781864	0.86[AFR][1000 genomes]
rs2434995	1.00[AFR][1000 genomes]
rs2562433	1.00[AFR][1000 genomes]
rs28816529	1.00[AFR][1000 genomes]
rs2914641	1.00[AFR][1000 genomes]
rs2914642	1.00[AFR][1000 genomes]
rs2928212	1.00[AFR][1000 genomes]
rs2968027	1.00[AFR][1000 genomes]
rs2968087	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv963023	chr19:21491992-21570395	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv3415719	chr19:21511760-21519079	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21512400-21512800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr19:21512400-21512800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr19:21512400-21513200	Flanking Active TSS	Dnd41	blood
4	chr19:21512400-21513600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:21512400-21513600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:21512400-21515000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr19:21512600-21512800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr19:21512600-21512800	Enhancers	Fetal Muscle Leg	muscle
9	chr19:21512600-21513000	Enhancers	Primary B cells from cord blood	blood
10	chr19:21512600-21513000	Enhancers	Primary B cells from peripheral blood	blood
11	chr19:21512600-21513000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr19:21512600-21513000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr19:21512600-21513000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr19:21512600-21513000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:21512600-21513200	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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