Variant report

Variant	rs168022
Chromosome Location	chr1:61629453-61629454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:61627635..61630028-chr1:61649668..61651681,2	K562	blood:
2	chr1:61629129..61632873-chr1:61634036..61638696,5	K562	blood:
3	chr1:61622127..61624762-chr1:61628255..61629757,2	K562	blood:
4	chr1:61626663..61630629-chr1:61636712..61638696,3	K562	blood:
5	chr1:61623244..61625857-chr1:61628268..61629973,2	MCF-7	breast:
6	chr1:61629245..61632079-chr1:61634601..61636701,3	K562	blood:
7	chr1:61622127..61626691-chr1:61627901..61630781,5	K562	blood:
8	chr1:61515588..61517857-chr1:61626564..61630046,4	K562	blood:

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11207708	0.87[JPT][hapmap]
rs334701	0.85[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs334702	0.88[EUR][1000 genomes]
rs334708	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs334710	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs334711	1.00[CEU][hapmap]
rs334712	0.85[CEU][hapmap]
rs334717	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs334718	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs334720	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs334722	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs334724	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs334732	0.81[EUR][1000 genomes]
rs382704	0.81[EUR][1000 genomes]
rs4915728	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008634	chr1:61613785-61671468	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61606000-61649000	Weak transcription	Spleen	Spleen
2	chr1:61612000-61635800	Weak transcription	Lung	lung
3	chr1:61615400-61635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:61615400-61635600	Weak transcription	Hela-S3	cervix
5	chr1:61619200-61649000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:61621800-61630000	Enhancers	Fetal Heart	heart
7	chr1:61622800-61635800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:61622800-61635800	Weak transcription	HUVEC	blood vessel
9	chr1:61623400-61635800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:61623600-61635000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:61623600-61635800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:61623800-61635600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:61624000-61634600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:61624000-61636000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:61624400-61634600	Weak transcription	A549	lung
16	chr1:61624600-61635800	Weak transcription	Fetal Intestine Large	intestine
17	chr1:61624600-61635800	Weak transcription	Fetal Intestine Small	intestine
18	chr1:61624600-61650400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:61625200-61630400	Weak transcription	Aorta	Aorta
20	chr1:61625200-61632800	Weak transcription	Liver	Liver
21	chr1:61625200-61635000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr1:61626000-61633200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:61626400-61633200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:61626400-61635600	Weak transcription	HMEC	breast
25	chr1:61626400-61635800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:61626400-61639000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:61627000-61635600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr1:61627200-61634600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:61627400-61633200	Weak transcription	Fetal Lung	lung
30	chr1:61627400-61635000	Weak transcription	Ovary	ovary
31	chr1:61627800-61630200	Enhancers	Colon Smooth Muscle	Colon
32	chr1:61628000-61630200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:61628200-61629600	Enhancers	Rectal Smooth Muscle	rectum
34	chr1:61628200-61629600	Enhancers	Osteobl	bone
35	chr1:61628200-61630000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:61628200-61630200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:61628200-61630200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr1:61628400-61629600	Enhancers	K562	blood
39	chr1:61628400-61631400	Weak transcription	HepG2	liver
40	chr1:61628400-61633400	Weak transcription	Fetal Stomach	stomach
41	chr1:61628400-61635000	Weak transcription	Psoas Muscle	Psoas
42	chr1:61628400-61635000	Weak transcription	Right Atrium	heart
43	chr1:61628400-61635600	Weak transcription	Fetal Muscle Leg	muscle
44	chr1:61628400-61635800	Weak transcription	Gastric	stomach
45	chr1:61628400-61635800	Weak transcription	Right Ventricle	heart
46	chr1:61628400-61636000	Weak transcription	Brain Angular Gyrus	brain
47	chr1:61628600-61635800	Weak transcription	Left Ventricle	heart
48	chr1:61628800-61629600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:61628800-61629600	Enhancers	NHLF	lung
50	chr1:61628800-61629800	Enhancers	Duodenum Smooth Muscle	Duodenum

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