Variant report

Variant	rs382704
Chromosome Location	chr1:61587866-61587867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:61546278..61549906-chr1:61584945..61588150,4	K562	blood:
2	chr1:61585628..61588441-chr1:61589112..61591565,4	K562	blood:
3	chr1:61515616..61517513-chr1:61585866..61587878,2	K562	blood:
4	chr1:61545786..61550294-chr1:61584630..61589625,7	K562	blood:
5	chr1:61585959..61588154-chr1:61641270..61643000,2	K562	blood:
6	chr1:61501914..61504741-chr1:61586889..61589554,2	K562	blood:
7	chr1:61586978..61588687-chr1:61705732..61707786,2	K562	blood:
8	chr1:61586702..61589358-chr1:61595053..61596740,2	K562	blood:
9	chr1:61584347..61588308-chr1:61598128..61600644,3	K562	blood:
10	chr1:61520526..61523286-chr1:61586860..61589725,3	K562	blood:
11	chr1:61585743..61588547-chr1:61696808..61699066,2	K562	blood:
12	chr1:61585280..61588265-chr1:61616173..61618887,3	K562	blood:
13	chr1:61567279..61569762-chr1:61586131..61588682,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000263380	Chromatin interaction
ENSG00000270742	Chromatin interaction
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12064543	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12070080	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs168022	0.81[EUR][1000 genomes]
rs17121598	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2807991	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs334701	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs334702	0.87[EUR][1000 genomes]
rs334708	0.82[CEU][hapmap]
rs334712	0.85[CEU][hapmap]
rs334713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs334716	1.00[JPT][hapmap]
rs334723	1.00[JPT][hapmap]
rs334724	0.83[EUR][1000 genomes]
rs334730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs334731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs334732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs334733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs334734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs334737	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs334739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3748543	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs395936	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs406412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs440611	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4546954	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4915586	0.91[AFR][1000 genomes]
rs4915728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587910	1.00[JPT][hapmap]
rs6587911	1.00[JPT][hapmap]
rs6587912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6656179	1.00[JPT][hapmap]
rs6658101	1.00[JPT][hapmap]
rs694151	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs694161	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61581400-61592000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:61581400-61604600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:61581600-61589800	Weak transcription	Esophagus	oesophagus
4	chr1:61582400-61604800	Weak transcription	Hela-S3	cervix
5	chr1:61584400-61590000	Enhancers	A549	lung
6	chr1:61584400-61591000	Enhancers	Fetal Lung	lung
7	chr1:61584400-61591600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:61584600-61588400	Weak transcription	Left Ventricle	heart
9	chr1:61584600-61589800	Weak transcription	Gastric	stomach
10	chr1:61584600-61589800	Weak transcription	Pancreas	Pancrea
11	chr1:61584600-61589800	Weak transcription	Right Ventricle	heart
12	chr1:61584600-61597800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:61585000-61597400	Weak transcription	Ovary	ovary
14	chr1:61586200-61589800	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:61586200-61590800	Enhancers	Brain Germinal Matrix	brain
16	chr1:61586200-61597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:61586400-61588000	Weak transcription	Psoas Muscle	Psoas
18	chr1:61586400-61588200	Enhancers	Colon Smooth Muscle	Colon
19	chr1:61586400-61588800	Enhancers	Brain Anterior Caudate	brain
20	chr1:61586400-61597000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:61586600-61590000	Enhancers	Fetal Heart	heart
22	chr1:61586600-61590400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:61586600-61598200	Weak transcription	Fetal Intestine Small	intestine
24	chr1:61586800-61588600	Enhancers	Adipose Nuclei	Adipose
25	chr1:61586800-61588800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr1:61586800-61589600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:61586800-61589800	Weak transcription	Right Atrium	heart
28	chr1:61586800-61590800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr1:61586800-61591200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:61586800-61592200	Enhancers	Brain Substantia Nigra	brain
31	chr1:61586800-61597400	Weak transcription	NHEK	skin
32	chr1:61586800-61597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:61587000-61588000	Weak transcription	Aorta	Aorta
34	chr1:61587000-61588000	Weak transcription	Fetal Brain Female	brain
35	chr1:61587000-61588600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr1:61587000-61589200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:61587000-61590000	Enhancers	Brain Cingulate Gyrus	brain
38	chr1:61587000-61590200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr1:61587000-61591600	Enhancers	Fetal Brain Male	brain
40	chr1:61587000-61597600	Weak transcription	NHLF	lung
41	chr1:61587000-61598400	Weak transcription	NHDF-Ad	bronchial
42	chr1:61587000-61606800	Weak transcription	Fetal Intestine Large	intestine
43	chr1:61587200-61588000	Enhancers	Muscle Satellite Cultured Cells	--
44	chr1:61587400-61588200	Enhancers	K562	blood
45	chr1:61587400-61589400	Weak transcription	Stomach Mucosa	stomach
46	chr1:61587400-61591000	Enhancers	Brain Angular Gyrus	brain
47	chr1:61587400-61591800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:61587600-61588000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:61587600-61588200	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr1:61587600-61588800	Enhancers	Brain Hippocampus Middle	brain

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