Variant report

Variant	rs694151
Chromosome Location	chr1:61606945-61606946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:61606636..61608407-chr1:61648572..61650162,2	K562	blood:
2	chr1:61599335..61602150-chr1:61604972..61607069,2	MCF-7	breast:
3	chr1:61605390..61608358-chr1:61610014..61613874,4	K562	blood:
4	chr1:61514859..61517241-chr1:61605868..61607629,2	K562	blood:
5	chr1:61546479..61549728-chr1:61604442..61607860,4	K562	blood:
6	chr1:61546357..61547979-chr1:61606360..61608862,2	K562	blood:
7	chr1:61584667..61586384-chr1:61605041..61607679,2	K562	blood:
8	chr1:61588517..61590728-chr1:61605317..61607280,2	K562	blood:
9	chr1:61605602..61607167-chr1:61748089..61750819,2	K562	blood:
10	chr1:61605231..61608148-chr1:61617822..61620797,4	K562	blood:
11	chr1:61582751..61584535-chr1:61605454..61607755,2	K562	blood:
12	chr1:61605495..61608078-chr1:61787528..61789872,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction
ENSG00000270742	Chromatin interaction
ENSG00000263380	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12064543	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12070080	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17121598	1.00[EUR][1000 genomes]
rs2807991	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334698	0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334699	0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334700	0.86[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334702	0.82[ASN][1000 genomes]
rs334703	0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334704	0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334705	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334706	0.87[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334709	0.87[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334710	0.84[EUR][1000 genomes]
rs334713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334716	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs334718	0.84[EUR][1000 genomes]
rs334719	0.93[EUR][1000 genomes]
rs334721	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs334723	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs334725	0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334726	0.87[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334727	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334728	0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334729	0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs334730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs334731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs334732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs334733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs334734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs334737	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs334739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3748543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs382704	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs395936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs406412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs440611	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4546954	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4915586	1.00[EUR][1000 genomes]
rs4915728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6587912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs694161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61600000-61617200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:61603800-61607000	Enhancers	Left Ventricle	heart
3	chr1:61603800-61607200	Enhancers	Psoas Muscle	Psoas
4	chr1:61603800-61607400	Enhancers	Aorta	Aorta
5	chr1:61603800-61608400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:61604000-61608400	Weak transcription	Lung	lung
7	chr1:61604400-61609200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:61604600-61607800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:61604600-61607800	Enhancers	Fetal Muscle Leg	muscle
10	chr1:61604600-61608800	Enhancers	Brain Anterior Caudate	brain
11	chr1:61604600-61609000	Enhancers	Liver	Liver
12	chr1:61604600-61610400	Enhancers	Brain Substantia Nigra	brain
13	chr1:61604800-61607400	Enhancers	Fetal Brain Male	brain
14	chr1:61604800-61607600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:61604800-61607600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:61604800-61607600	Enhancers	Ovary	ovary
17	chr1:61604800-61607600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr1:61604800-61607800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:61604800-61607800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:61604800-61608000	Enhancers	Fetal Heart	heart
21	chr1:61604800-61608600	Enhancers	Adipose Nuclei	Adipose
22	chr1:61604800-61608600	Enhancers	HepG2	liver
23	chr1:61604800-61608800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:61604800-61609400	Enhancers	Brain Cingulate Gyrus	brain
25	chr1:61604800-61610000	Enhancers	Colon Smooth Muscle	Colon
26	chr1:61604800-61610200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:61605000-61607000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:61605000-61607400	Enhancers	Fetal Brain Female	brain
29	chr1:61605000-61607600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:61605000-61607600	Enhancers	Brain Germinal Matrix	brain
31	chr1:61605000-61607600	Enhancers	Right Atrium	heart
32	chr1:61605000-61607600	Enhancers	Small Intestine	intestine
33	chr1:61605000-61607800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr1:61605000-61607800	Flanking Active TSS	K562	blood
35	chr1:61605000-61608600	Enhancers	Fetal Lung	lung
36	chr1:61605200-61607400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:61605200-61607600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr1:61605200-61607800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr1:61605200-61607800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr1:61605200-61607800	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr1:61605200-61608400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr1:61605200-61608400	Enhancers	Fetal Stomach	stomach
43	chr1:61605200-61608600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr1:61605200-61610200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:61605200-61610200	Enhancers	Hela-S3	cervix
46	chr1:61605400-61607200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:61605400-61609600	Enhancers	HMEC	breast
48	chr1:61605400-61617200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr1:61605600-61607200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr1:61605800-61607600	Enhancers	Sigmoid Colon	Sigmoid Colon

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