Variant report

Variant	rs17121598
Chromosome Location	chr1:61564904-61564905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:61563289..61566270-chr1:61566555..61569586,4	K562	blood:
2	chr1:61515283..61518278-chr1:61564084..61568458,5	K562	blood:
3	chr1:61522323..61524411-chr1:61562125..61565012,2	K562	blood:
4	chr1:61521000..61524411-chr1:61562125..61565012,3	K562	blood:
5	chr1:61560731..61562508-chr1:61563952..61565841,2	K562	blood:
6	chr1:61560444..61562508-chr1:61563542..61567587,4	K562	blood:
7	chr1:61563954..61566270-chr1:61566555..61568086,2	K562	blood:
8	chr1:61564265..61567252-chr1:61572023..61573732,2	K562	blood:

No data

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12064543	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070080	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2807991	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs334698	0.93[EUR][1000 genomes]
rs334699	0.93[EUR][1000 genomes]
rs334700	0.93[EUR][1000 genomes]
rs334703	0.93[EUR][1000 genomes]
rs334704	0.93[EUR][1000 genomes]
rs334705	0.93[EUR][1000 genomes]
rs334706	0.93[EUR][1000 genomes]
rs334709	0.93[EUR][1000 genomes]
rs334710	0.84[EUR][1000 genomes]
rs334713	0.93[EUR][1000 genomes]
rs334716	0.93[EUR][1000 genomes]
rs334718	0.84[EUR][1000 genomes]
rs334719	0.93[EUR][1000 genomes]
rs334721	0.96[EUR][1000 genomes]
rs334723	0.93[EUR][1000 genomes]
rs334725	0.93[EUR][1000 genomes]
rs334726	0.93[EUR][1000 genomes]
rs334727	0.93[EUR][1000 genomes]
rs334728	0.93[EUR][1000 genomes]
rs334729	0.90[EUR][1000 genomes]
rs334730	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs334731	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs334732	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs334733	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs334734	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs334737	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs334739	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3748543	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs382704	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs395936	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs406412	1.00[EUR][1000 genomes]
rs440611	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4546954	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4915586	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4915728	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6587912	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs694151	1.00[EUR][1000 genomes]
rs694161	0.96[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61554600-61565800	Weak transcription	Gastric	stomach
2	chr1:61554600-61567000	Weak transcription	NHLF	lung
3	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
4	chr1:61555400-61565800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:61556600-61567000	Weak transcription	HSMMtube	muscle
7	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:61558600-61568400	Weak transcription	Small Intestine	intestine
9	chr1:61558600-61581200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:61558600-61586000	Weak transcription	Fetal Intestine Small	intestine
11	chr1:61559000-61582000	Weak transcription	Hela-S3	cervix
12	chr1:61559600-61569800	Weak transcription	K562	blood
13	chr1:61560000-61566800	Weak transcription	Right Atrium	heart
14	chr1:61560400-61566000	Weak transcription	Psoas Muscle	Psoas
15	chr1:61560400-61575800	Weak transcription	Fetal Stomach	stomach
16	chr1:61560800-61567800	Enhancers	Liver	Liver
17	chr1:61561000-61567200	Weak transcription	Aorta	Aorta
18	chr1:61561200-61567000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:61561400-61565400	Enhancers	Fetal Brain Male	brain
20	chr1:61561400-61565800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:61561400-61567200	Weak transcription	Fetal Lung	lung
22	chr1:61561400-61576200	Weak transcription	HUVEC	blood vessel
23	chr1:61561600-61567200	Weak transcription	A549	lung
24	chr1:61562600-61566200	Weak transcription	Left Ventricle	heart
25	chr1:61562800-61565200	Enhancers	Brain Angular Gyrus	brain
26	chr1:61562800-61566200	Enhancers	Brain Cingulate Gyrus	brain
27	chr1:61562800-61566800	Enhancers	Brain Hippocampus Middle	brain
28	chr1:61563000-61565000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:61563000-61565000	Enhancers	Brain Anterior Caudate	brain
30	chr1:61563000-61567200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr1:61563600-61566800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:61563600-61566800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:61563600-61567000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:61563600-61567000	Weak transcription	NHDF-Ad	bronchial
35	chr1:61563600-61567200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:61563600-61568400	Weak transcription	Stomach Mucosa	stomach
37	chr1:61563600-61586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:61563800-61565200	Weak transcription	Right Ventricle	heart
39	chr1:61563800-61567000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:61563800-61567000	Weak transcription	Adipose Nuclei	Adipose
41	chr1:61563800-61567000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr1:61563800-61567000	Weak transcription	HSMM	muscle
43	chr1:61563800-61567000	Weak transcription	Osteobl	bone
44	chr1:61563800-61567400	Weak transcription	Fetal Brain Female	brain
45	chr1:61563800-61585600	Weak transcription	NHEK	skin
46	chr1:61563800-61585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:61564000-61565000	Enhancers	Brain Germinal Matrix	brain
48	chr1:61564000-61565200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:61564000-61565200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr1:61564000-61565800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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