Variant report

Variant	rs334733
Chromosome Location	chr1:61596658-61596659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:61589396..61591508-chr1:61595593..61597772,2	K562	blood:
2	chr1:61586702..61589358-chr1:61595053..61596740,2	K562	blood:
3	chr1:61594082..61599148-chr1:61599655..61602898,9	K562	blood:
4	chr1:61582646..61586479-chr1:61593014..61597030,4	K562	blood:
5	chr1:61595988..61597504-chr1:61603571..61605309,2	K562	blood:
6	chr1:61552154..61554594-chr1:61596507..61599037,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INADL-2	chr1:61593091-61597315	ENSG00000248141

No data

Variant related genes	Relation type
ENSG00000270742	Chromatin interaction
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12064543	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12070080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17121598	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807991	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs334698	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334699	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334700	0.93[EUR][1000 genomes]
rs334701	0.87[GIH][hapmap]
rs334703	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334704	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334705	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs334706	0.93[EUR][1000 genomes]
rs334709	0.93[EUR][1000 genomes]
rs334710	0.84[EUR][1000 genomes]
rs334713	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs334716	0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334718	0.84[EUR][1000 genomes]
rs334719	0.93[EUR][1000 genomes]
rs334721	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs334723	0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334725	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334726	0.93[EUR][1000 genomes]
rs334727	0.93[EUR][1000 genomes]
rs334728	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334729	0.90[EUR][1000 genomes]
rs334730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs334734	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748543	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs382704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs395936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs406412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs440611	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4546954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4915586	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4915728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6587912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs694151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs694161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61581400-61604600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61582400-61604800	Weak transcription	Hela-S3	cervix
3	chr1:61584600-61597800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:61585000-61597400	Weak transcription	Ovary	ovary
5	chr1:61586200-61597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:61586400-61597000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:61586600-61598200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:61586800-61597400	Weak transcription	NHEK	skin
9	chr1:61586800-61597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:61587000-61597600	Weak transcription	NHLF	lung
11	chr1:61587000-61598400	Weak transcription	NHDF-Ad	bronchial
12	chr1:61587000-61606800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:61588200-61597400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:61590000-61597600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:61590200-61597000	Weak transcription	HepG2	liver
16	chr1:61590600-61597000	Weak transcription	Right Ventricle	heart
17	chr1:61591000-61597400	Weak transcription	Aorta	Aorta
18	chr1:61591600-61597000	Weak transcription	Brain Angular Gyrus	brain
19	chr1:61591600-61597800	Weak transcription	Right Atrium	heart
20	chr1:61591800-61597000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:61591800-61597000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:61591800-61597200	Weak transcription	Adipose Nuclei	Adipose
23	chr1:61591800-61597400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:61591800-61604600	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:61592000-61598000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:61592200-61597000	Weak transcription	Brain Substantia Nigra	brain
27	chr1:61592400-61597000	Weak transcription	Brain Anterior Caudate	brain
28	chr1:61593200-61597000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:61594000-61597000	Weak transcription	Fetal Stomach	stomach
30	chr1:61594200-61597400	Weak transcription	Small Intestine	intestine
31	chr1:61594200-61603800	Weak transcription	Left Ventricle	heart
32	chr1:61595400-61600200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr1:61595600-61596800	Enhancers	Fetal Brain Male	brain
34	chr1:61595600-61599000	Enhancers	Fetal Heart	heart
35	chr1:61595800-61598200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:61595800-61599400	Enhancers	Fetal Brain Female	brain
37	chr1:61596000-61597600	Enhancers	A549	lung
38	chr1:61596200-61598000	Enhancers	Colon Smooth Muscle	Colon
39	chr1:61596200-61599000	Enhancers	Liver	Liver
40	chr1:61596200-61599000	Enhancers	Brain Germinal Matrix	brain
41	chr1:61596200-61599400	Enhancers	Fetal Lung	lung
42	chr1:61596400-61596800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:61596400-61596800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr1:61596400-61596800	Weak transcription	Psoas Muscle	Psoas
45	chr1:61596400-61596800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:61596400-61598000	Enhancers	Brain Hippocampus Middle	brain
47	chr1:61596400-61598200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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