Variant report

Variant	rs334729
Chromosome Location	chr1:61608473-61608474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61603444..61606852-chr1:61607360..61609614,3	K562	blood:
2	chr1:61546357..61547979-chr1:61606360..61608862,2	K562	blood:
3	chr1:61607832..61610004-chr1:61927274..61928850,2	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12064543	0.90[EUR][1000 genomes]
rs12070080	0.90[EUR][1000 genomes]
rs17121598	0.90[EUR][1000 genomes]
rs2807991	0.90[EUR][1000 genomes]
rs334698	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334699	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334700	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334701	0.82[CEU][hapmap];0.87[AFR][1000 genomes]
rs334702	0.90[AFR][1000 genomes]
rs334703	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334704	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334705	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334706	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334708	0.82[CEU][hapmap]
rs334709	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334710	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs334713	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs334716	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs334718	0.81[EUR][1000 genomes]
rs334719	0.90[EUR][1000 genomes]
rs334721	0.87[EUR][1000 genomes]
rs334723	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs334725	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334726	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334727	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334728	1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334730	0.90[EUR][1000 genomes]
rs334731	0.90[EUR][1000 genomes]
rs334733	0.90[EUR][1000 genomes]
rs334734	0.90[EUR][1000 genomes]
rs334737	0.90[EUR][1000 genomes]
rs334739	0.90[EUR][1000 genomes]
rs3748543	0.90[EUR][1000 genomes]
rs395936	0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs406412	0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs440611	0.90[EUR][1000 genomes]
rs4546954	0.90[EUR][1000 genomes]
rs4915586	0.90[EUR][1000 genomes]
rs6587912	0.90[EUR][1000 genomes]
rs694151	0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs694161	0.93[YRI][hapmap];0.87[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61600000-61617200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:61604400-61609200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:61604600-61608800	Enhancers	Brain Anterior Caudate	brain
4	chr1:61604600-61609000	Enhancers	Liver	Liver
5	chr1:61604600-61610400	Enhancers	Brain Substantia Nigra	brain
6	chr1:61604800-61608600	Enhancers	Adipose Nuclei	Adipose
7	chr1:61604800-61608600	Enhancers	HepG2	liver
8	chr1:61604800-61608800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:61604800-61609400	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:61604800-61610000	Enhancers	Colon Smooth Muscle	Colon
11	chr1:61604800-61610200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:61605000-61608600	Enhancers	Fetal Lung	lung
13	chr1:61605200-61608600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:61605200-61610200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:61605200-61610200	Enhancers	Hela-S3	cervix
16	chr1:61605400-61609600	Enhancers	HMEC	breast
17	chr1:61605400-61617200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:61605800-61609200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr1:61606000-61608600	Weak transcription	Esophagus	oesophagus
20	chr1:61606000-61649000	Weak transcription	Spleen	Spleen
21	chr1:61606400-61616600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr1:61606600-61609200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:61606800-61609600	Enhancers	NHLF	lung
24	chr1:61606800-61610000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:61607000-61609800	Enhancers	NHDF-Ad	bronchial
26	chr1:61607200-61610400	Enhancers	Brain Hippocampus Middle	brain
27	chr1:61607400-61609000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:61607400-61609000	Weak transcription	Stomach Mucosa	stomach
29	chr1:61607400-61615800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:61607600-61608600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:61607600-61608800	Flanking Active TSS	NHEK	skin
32	chr1:61607600-61609600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:61607600-61609800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr1:61607600-61609800	Weak transcription	Brain Germinal Matrix	brain
35	chr1:61607600-61610000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:61607600-61611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr1:61607600-61611400	Weak transcription	Small Intestine	intestine
38	chr1:61607600-61617000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr1:61607600-61617800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr1:61607600-61622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:61607800-61609600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr1:61607800-61609600	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr1:61607800-61609600	Enhancers	HUVEC	blood vessel
44	chr1:61607800-61610000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:61607800-61610000	Enhancers	Fetal Brain Male	brain
46	chr1:61607800-61610000	Weak transcription	Fetal Muscle Leg	muscle
47	chr1:61607800-61610200	Enhancers	K562	blood
48	chr1:61607800-61613400	Weak transcription	Fetal Intestine Small	intestine
49	chr1:61607800-61615600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr1:61607800-61616000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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