Variant report

Variant	rs334725
Chromosome Location	chr1:61610049-61610050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61609969..61611862-chr1:61612335..61615496,3	MCF-7	breast:
2	chr1:61602650..61606392-chr1:61608664..61611544,4	MCF-7	breast:
3	chr1:61609709..61612084-chr1:61626499..61628122,2	K562	blood:
4	chr1:61605390..61608358-chr1:61610014..61613874,4	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12064543	0.93[EUR][1000 genomes]
rs12070080	0.93[EUR][1000 genomes]
rs17121598	0.93[EUR][1000 genomes]
rs2807991	0.93[EUR][1000 genomes]
rs334698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334699	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334701	0.87[ASW][hapmap];0.82[CEU][hapmap];0.88[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes]
rs334702	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs334703	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334704	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334708	0.82[CEU][hapmap]
rs334709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334710	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs334712	0.82[CEU][hapmap]
rs334713	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334716	0.89[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.83[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs334718	0.84[EUR][1000 genomes]
rs334719	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs334721	0.90[EUR][1000 genomes]
rs334723	0.89[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs334726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334728	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334729	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs334730	0.93[EUR][1000 genomes]
rs334731	0.93[EUR][1000 genomes]
rs334733	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334734	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs334737	0.93[EUR][1000 genomes]
rs334739	0.93[EUR][1000 genomes]
rs3748543	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs395936	0.90[ASW][hapmap];0.94[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs406412	0.90[ASW][hapmap];0.94[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs440611	0.93[EUR][1000 genomes]
rs4546954	0.93[EUR][1000 genomes]
rs4915586	0.93[EUR][1000 genomes]
rs6587912	0.93[EUR][1000 genomes]
rs694151	0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs694161	0.85[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61600000-61617200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:61604600-61610400	Enhancers	Brain Substantia Nigra	brain
3	chr1:61604800-61610200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:61605200-61610200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:61605200-61610200	Enhancers	Hela-S3	cervix
6	chr1:61605400-61617200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:61606000-61649000	Weak transcription	Spleen	Spleen
8	chr1:61606400-61616600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:61607200-61610400	Enhancers	Brain Hippocampus Middle	brain
10	chr1:61607400-61615800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:61607600-61611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:61607600-61611400	Weak transcription	Small Intestine	intestine
13	chr1:61607600-61617000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:61607600-61617800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:61607600-61622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:61607800-61610200	Enhancers	K562	blood
17	chr1:61607800-61613400	Weak transcription	Fetal Intestine Small	intestine
18	chr1:61607800-61615600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:61607800-61616000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:61607800-61616400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:61607800-61616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr1:61607800-61617200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:61607800-61617800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:61607800-61618000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:61607800-61622600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:61608200-61610200	Enhancers	A549	lung
27	chr1:61608200-61611400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr1:61608400-61610200	Enhancers	Aorta	Aorta
29	chr1:61608400-61610200	Enhancers	Fetal Heart	heart
30	chr1:61608400-61610200	Enhancers	Pancreas	Pancrea
31	chr1:61608400-61617000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:61608400-61617200	Weak transcription	Fetal Stomach	stomach
33	chr1:61608600-61611600	Weak transcription	Fetal Intestine Large	intestine
34	chr1:61608600-61613800	Weak transcription	Colonic Mucosa	Colon
35	chr1:61608600-61614400	Genic enhancers	HepG2	liver
36	chr1:61608600-61617800	Weak transcription	Adipose Nuclei	Adipose
37	chr1:61608800-61610200	Enhancers	NHEK	skin
38	chr1:61608800-61611600	Weak transcription	Brain Anterior Caudate	brain
39	chr1:61608800-61611600	Weak transcription	Ovary	ovary
40	chr1:61608800-61614600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:61609000-61612200	Weak transcription	Liver	Liver
42	chr1:61609200-61610200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr1:61609200-61610400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
44	chr1:61609200-61611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr1:61609200-61611600	Weak transcription	Left Ventricle	heart
46	chr1:61609200-61611600	Weak transcription	Lung	lung
47	chr1:61609200-61613800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:61609200-61617200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr1:61609200-61617400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr1:61609400-61610200	Enhancers	Skeletal Muscle Male	skeletal muscle

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