The 2.0 version of rSNPBase

Variant report

Variant rs3748543
Chromosome Location chr1:61595989-61595990
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61581400-61604600 Weak transcription Fetal Muscle Trunk muscle
2 chr1:61582400-61604800 Weak transcription Hela-S3 cervix
3 chr1:61584600-61597800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:61585000-61597400 Weak transcription Ovary ovary
5 chr1:61586200-61597800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:61586400-61597000 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:61586600-61598200 Weak transcription Fetal Intestine Small intestine
8 chr1:61586800-61597400 Weak transcription NHEK skin
9 chr1:61586800-61597800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:61587000-61597600 Weak transcription NHLF lung
11 chr1:61587000-61598400 Weak transcription NHDF-Ad bronchial
12 chr1:61587000-61606800 Weak transcription Fetal Intestine Large intestine
13 chr1:61588200-61597400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:61588400-61596200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:61590000-61597600 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr1:61590200-61597000 Weak transcription HepG2 liver
17 chr1:61590600-61596000 Weak transcription A549 lung
18 chr1:61590600-61597000 Weak transcription Right Ventricle heart
19 chr1:61591000-61596200 Weak transcription Fetal Lung lung
20 chr1:61591000-61597400 Weak transcription Aorta Aorta
21 chr1:61591600-61597000 Weak transcription Brain Angular Gyrus brain
22 chr1:61591600-61597800 Weak transcription Right Atrium heart
23 chr1:61591800-61596200 Weak transcription Liver Liver
24 chr1:61591800-61596200 Weak transcription Brain Germinal Matrix brain
25 chr1:61591800-61597000 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:61591800-61597000 Weak transcription Stomach Smooth Muscle stomach
27 chr1:61591800-61597200 Weak transcription Adipose Nuclei Adipose
28 chr1:61591800-61597400 Weak transcription Rectal Smooth Muscle rectum
29 chr1:61591800-61604600 Weak transcription Fetal Muscle Leg muscle
30 chr1:61592000-61598000 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:61592200-61596200 Weak transcription Psoas Muscle Psoas
32 chr1:61592200-61596400 Weak transcription Brain Hippocampus Middle brain
33 chr1:61592200-61597000 Weak transcription Brain Substantia Nigra brain
34 chr1:61592400-61596200 Weak transcription Brain Cingulate Gyrus brain
35 chr1:61592400-61597000 Weak transcription Brain Anterior Caudate brain
36 chr1:61592600-61596200 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:61593200-61597000 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:61594000-61597000 Weak transcription Fetal Stomach stomach
39 chr1:61594200-61597400 Weak transcription Small Intestine intestine
40 chr1:61594200-61603800 Weak transcription Left Ventricle heart
41 chr1:61595400-61600200 Enhancers Cortex derived primary cultured neurospheres brain
42 chr1:61595600-61596800 Enhancers Fetal Brain Male brain
43 chr1:61595600-61599000 Enhancers Fetal Heart heart
44 chr1:61595800-61596200 Weak transcription Colon Smooth Muscle Colon
45 chr1:61595800-61598200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
46 chr1:61595800-61599400 Enhancers Fetal Brain Female brain

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Last update: Aug 31, 2015