Variant report

Variant rs440611
Chromosome Location chr1:61587680-61587681
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61581400-61592000 Weak transcription Primary hematopoietic stem cells blood
2 chr1:61581400-61604600 Weak transcription Fetal Muscle Trunk muscle
3 chr1:61581600-61589800 Weak transcription Esophagus oesophagus
4 chr1:61582400-61604800 Weak transcription Hela-S3 cervix
5 chr1:61584400-61590000 Enhancers A549 lung
6 chr1:61584400-61591000 Enhancers Fetal Lung lung
7 chr1:61584400-61591600 Enhancers Cortex derived primary cultured neurospheres brain
8 chr1:61584600-61588400 Weak transcription Left Ventricle heart
9 chr1:61584600-61589800 Weak transcription Gastric stomach
10 chr1:61584600-61589800 Weak transcription Pancreas Pancrea
11 chr1:61584600-61589800 Weak transcription Right Ventricle heart
12 chr1:61584600-61597800 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:61585000-61597400 Weak transcription Ovary ovary
14 chr1:61586200-61589800 Weak transcription Fetal Muscle Leg muscle
15 chr1:61586200-61590800 Enhancers Brain Germinal Matrix brain
16 chr1:61586200-61597800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:61586400-61588000 Weak transcription Psoas Muscle Psoas
18 chr1:61586400-61588200 Enhancers Colon Smooth Muscle Colon
19 chr1:61586400-61588800 Enhancers Brain Anterior Caudate brain
20 chr1:61586400-61597000 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:61586600-61590000 Enhancers Fetal Heart heart
22 chr1:61586600-61590400 Weak transcription Stomach Smooth Muscle stomach
23 chr1:61586600-61598200 Weak transcription Fetal Intestine Small intestine
24 chr1:61586800-61587800 Enhancers HepG2 liver
25 chr1:61586800-61588600 Enhancers Adipose Nuclei Adipose
26 chr1:61586800-61588800 Enhancers Brain Inferior Temporal Lobe brain
27 chr1:61586800-61589600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:61586800-61589800 Weak transcription Right Atrium heart
29 chr1:61586800-61590800 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr1:61586800-61591200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:61586800-61592200 Enhancers Brain Substantia Nigra brain
32 chr1:61586800-61597400 Weak transcription NHEK skin
33 chr1:61586800-61597800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:61587000-61587800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:61587000-61587800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:61587000-61588000 Weak transcription Aorta Aorta
37 chr1:61587000-61588000 Weak transcription Fetal Brain Female brain
38 chr1:61587000-61588600 Enhancers Skeletal Muscle Female skeletal muscle
39 chr1:61587000-61589200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr1:61587000-61590000 Enhancers Brain Cingulate Gyrus brain
41 chr1:61587000-61590200 Enhancers Skeletal Muscle Male skeletal muscle
42 chr1:61587000-61591600 Enhancers Fetal Brain Male brain
43 chr1:61587000-61597600 Weak transcription NHLF lung
44 chr1:61587000-61598400 Weak transcription NHDF-Ad bronchial
45 chr1:61587000-61606800 Weak transcription Fetal Intestine Large intestine
46 chr1:61587200-61588000 Enhancers Muscle Satellite Cultured Cells --
47 chr1:61587400-61587800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr1:61587400-61587800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:61587400-61588200 Enhancers K562 blood
50 chr1:61587400-61589400 Weak transcription Stomach Mucosa stomach

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