The 2.0 version of rSNPBase

Variant report

Variant rs6587912
Chromosome Location chr1:61592377-61592378
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61581400-61604600 Weak transcription Fetal Muscle Trunk muscle
2 chr1:61582400-61604800 Weak transcription Hela-S3 cervix
3 chr1:61584600-61597800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:61585000-61597400 Weak transcription Ovary ovary
5 chr1:61586200-61597800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:61586400-61597000 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:61586600-61598200 Weak transcription Fetal Intestine Small intestine
8 chr1:61586800-61597400 Weak transcription NHEK skin
9 chr1:61586800-61597800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:61587000-61597600 Weak transcription NHLF lung
11 chr1:61587000-61598400 Weak transcription NHDF-Ad bronchial
12 chr1:61587000-61606800 Weak transcription Fetal Intestine Large intestine
13 chr1:61587600-61593800 Weak transcription Fetal Stomach stomach
14 chr1:61588200-61597400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:61588400-61596200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:61590000-61597600 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:61590200-61597000 Weak transcription HepG2 liver
18 chr1:61590600-61596000 Weak transcription A549 lung
19 chr1:61590600-61597000 Weak transcription Right Ventricle heart
20 chr1:61591000-61595800 Weak transcription Fetal Brain Female brain
21 chr1:61591000-61596200 Weak transcription Fetal Lung lung
22 chr1:61591000-61597400 Weak transcription Aorta Aorta
23 chr1:61591200-61592400 Enhancers Brain Cingulate Gyrus brain
24 chr1:61591200-61592600 Weak transcription Left Ventricle heart
25 chr1:61591200-61593000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:61591400-61592400 Enhancers Brain Anterior Caudate brain
27 chr1:61591600-61593400 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr1:61591600-61597000 Weak transcription Brain Angular Gyrus brain
29 chr1:61591600-61597800 Weak transcription Right Atrium heart
30 chr1:61591800-61593200 Enhancers Skeletal Muscle Male skeletal muscle
31 chr1:61591800-61593400 Enhancers Fetal Heart heart
32 chr1:61591800-61596200 Weak transcription Liver Liver
33 chr1:61591800-61596200 Weak transcription Brain Germinal Matrix brain
34 chr1:61591800-61597000 Weak transcription Brain Inferior Temporal Lobe brain
35 chr1:61591800-61597000 Weak transcription Stomach Smooth Muscle stomach
36 chr1:61591800-61597200 Weak transcription Adipose Nuclei Adipose
37 chr1:61591800-61597400 Weak transcription Rectal Smooth Muscle rectum
38 chr1:61591800-61604600 Weak transcription Fetal Muscle Leg muscle
39 chr1:61592000-61592600 Enhancers Skeletal Muscle Female skeletal muscle
40 chr1:61592000-61595600 Weak transcription Colon Smooth Muscle Colon
41 chr1:61592000-61598000 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr1:61592200-61595600 Weak transcription Fetal Brain Male brain
43 chr1:61592200-61596200 Weak transcription Psoas Muscle Psoas
44 chr1:61592200-61596400 Weak transcription Brain Hippocampus Middle brain
45 chr1:61592200-61597000 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015