The 2.0 version of rSNPBase

Variant report

Variant rs334718
Chromosome Location chr1:61639287-61639288
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61606000-61649000 Weak transcription Spleen Spleen
2 chr1:61619200-61649000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:61624600-61650400 Weak transcription Primary hematopoietic stem cells blood
4 chr1:61634400-61640400 Enhancers Brain Hippocampus Middle brain
5 chr1:61635000-61641000 Enhancers Brain Inferior Temporal Lobe brain
6 chr1:61635000-61641800 Enhancers Psoas Muscle Psoas
7 chr1:61635200-61639800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr1:61635600-61640400 Enhancers Breast Myoepithelial Primary Cells Breast
9 chr1:61635600-61640600 Enhancers Fetal Heart heart
10 chr1:61635600-61640800 Enhancers Right Atrium heart
11 chr1:61635600-61642200 Enhancers Brain Substantia Nigra brain
12 chr1:61635800-61639800 Enhancers Skeletal Muscle Female skeletal muscle
13 chr1:61635800-61640000 Enhancers Left Ventricle heart
14 chr1:61635800-61640800 Enhancers Skeletal Muscle Male skeletal muscle
15 chr1:61636000-61639400 Enhancers Fetal Muscle Leg muscle
16 chr1:61636000-61640400 Enhancers Brain Angular Gyrus brain
17 chr1:61636200-61644200 Weak transcription Esophagus oesophagus
18 chr1:61636200-61644200 Weak transcription Gastric stomach
19 chr1:61636200-61644200 Weak transcription Pancreas Pancrea
20 chr1:61636200-61648800 Weak transcription Placenta Placenta
21 chr1:61636200-61649000 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr1:61636400-61639800 Weak transcription HUES48 Cell Line embryonic stem cell
23 chr1:61636400-61640000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:61636600-61640400 Enhancers Fetal Brain Female brain
25 chr1:61636600-61644400 Weak transcription Stomach Mucosa stomach
26 chr1:61636600-61649000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:61636600-61649200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:61636800-61639400 Weak transcription HepG2 liver
29 chr1:61636800-61639600 Enhancers Stomach Smooth Muscle stomach
30 chr1:61636800-61647200 Weak transcription A549 lung
31 chr1:61636800-61647200 Weak transcription HUVEC blood vessel
32 chr1:61637200-61640400 Enhancers Adipose Nuclei Adipose
33 chr1:61637200-61640800 Enhancers Liver Liver
34 chr1:61637400-61640600 Enhancers Right Ventricle heart
35 chr1:61637400-61649000 Weak transcription Duodenum Mucosa Duodenum
36 chr1:61637600-61641600 Genic enhancers K562 blood
37 chr1:61637600-61643600 Weak transcription Ovary ovary
38 chr1:61637600-61649000 Weak transcription NHEK skin
39 chr1:61637800-61649000 Weak transcription Fetal Intestine Small intestine
40 chr1:61638000-61639600 Weak transcription Fetal Brain Male brain
41 chr1:61638000-61640000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr1:61638000-61640800 Enhancers Brain Anterior Caudate brain
43 chr1:61638000-61640800 Enhancers Colon Smooth Muscle Colon
44 chr1:61638000-61649800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:61638200-61650000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:61638400-61639400 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:61638400-61639800 Weak transcription Aorta Aorta
48 chr1:61638400-61640000 Weak transcription Brain Germinal Matrix brain
49 chr1:61638400-61648800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:61638800-61639600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015