Variant report

Variant	rs168056
Chromosome Location	chr13:110535776-110535777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1556572	0.85[AFR][1000 genomes]
rs1556573	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs336204	0.83[AFR][1000 genomes]
rs336210	0.85[AFR][1000 genomes]
rs372641	0.85[AFR][1000 genomes]
rs375176	0.85[AFR][1000 genomes]
rs72670106	0.83[AFR][1000 genomes]
rs8000582	0.85[AFR][1000 genomes]
rs9555649	0.85[AFR][1000 genomes]
rs9559672	0.85[AFR][1000 genomes]
rs9559673	0.85[AFR][1000 genomes]
rs9634587	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110522600-110537000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:110528800-110537000	Weak transcription	Right Atrium	heart
3	chr13:110529000-110537000	Weak transcription	Right Ventricle	heart
4	chr13:110533200-110535800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr13:110534800-110536200	Enhancers	Duodenum Mucosa	Duodenum
6	chr13:110535200-110535800	Enhancers	Fetal Intestine Small	intestine
7	chr13:110535400-110536000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr13:110535400-110536200	Enhancers	Fetal Intestine Large	intestine
9	chr13:110535400-110536400	Enhancers	Fetal Heart	heart
10	chr13:110535600-110536400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:110535600-110537400	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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