Variant report

Variant	rs9559673
Chromosome Location	chr13:110570995-110570996
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1333984	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333987	0.81[ASN][1000 genomes]
rs1556571	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1556574	0.85[JPT][hapmap]
rs168056	0.85[AFR][1000 genomes]
rs1855439	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186764	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs336204	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs336210	0.97[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs372641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs375176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs416839	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs422209	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs452964	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670114	0.83[ASN][1000 genomes]
rs7330996	0.83[ASN][1000 genomes]
rs8000582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8000641	0.83[ASN][1000 genomes]
rs9555645	0.84[JPT][hapmap]
rs9555646	0.85[JPT][hapmap]
rs9555647	0.84[JPT][hapmap]
rs9555649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9555650	0.80[ASN][1000 genomes]
rs9559672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9559676	0.82[ASN][1000 genomes]
rs9634587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634589	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634590	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989064	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110566200-110572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110566800-110590400	Weak transcription	Aorta	Aorta
3	chr13:110569000-110571200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:110569400-110573400	Enhancers	HSMM	muscle
5	chr13:110569600-110572400	Enhancers	HSMMtube	muscle
6	chr13:110569600-110573000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:110570400-110571200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:110570400-110571200	Enhancers	Colon Smooth Muscle	Colon
9	chr13:110570400-110571400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr13:110570400-110571400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:110570600-110571200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:110570600-110571400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:110570800-110571000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr13:110570800-110571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:110570800-110571200	Enhancers	Ovary	ovary
16	chr13:110570800-110571200	Enhancers	NH-A	brain
17	chr13:110570800-110571800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr13:110570800-110572400	Enhancers	Adipose Nuclei	Adipose
19	chr13:110570800-110572400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr13:110570800-110574800	Weak transcription	NHDF-Ad	bronchial

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