Variant report

Variant	rs1855439
Chromosome Location	chr13:110573869-110573870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1333984	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333987	0.81[ASN][1000 genomes]
rs1556571	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556572	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556573	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs186764	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs336204	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs336210	0.86[ASN][1000 genomes]
rs372641	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs375176	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs416839	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs422209	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs452964	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670106	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670114	0.83[ASN][1000 genomes]
rs7330996	0.83[ASN][1000 genomes]
rs8000582	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8000641	0.83[ASN][1000 genomes]
rs9555649	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9555650	0.80[ASN][1000 genomes]
rs9559672	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9559673	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9559676	0.82[ASN][1000 genomes]
rs9634587	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634589	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634590	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989064	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110566800-110590400	Weak transcription	Aorta	Aorta
2	chr13:110570800-110574800	Weak transcription	NHDF-Ad	bronchial
3	chr13:110571000-110586000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:110571200-110574600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:110572600-110574400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:110572600-110574600	Weak transcription	NHLF	lung
7	chr13:110572800-110574600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:110573000-110574000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:110573000-110574200	Weak transcription	NH-A	brain
10	chr13:110573000-110574400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:110573400-110574600	Weak transcription	HSMM	muscle

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