Variant report
| Variant | rs416839 |
|---|---|
| Chromosome Location | chr13:110554330-110554331 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1333984 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1556571 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1556572 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1556573 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1855439 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs186764 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs336204 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs372641 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs375176 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs422209 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs452964 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72670106 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8000582 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9555649 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9559672 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9559673 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9634587 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9634589 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9634590 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9989064 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832719 | chr13:110512259-110655883 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:110553400-110563200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
