Variant report

Variant	rs9989064
Chromosome Location	chr13:110579475-110579476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110574047..110576014-chr13:110576632..110579536,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1333984	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1333987	0.88[ASN][1000 genomes]
rs1556571	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1556572	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1556573	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1556574	0.86[JPT][hapmap]
rs1855439	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs186764	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs336204	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs336210	0.81[ASN][1000 genomes]
rs372641	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs375176	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs416839	0.90[EUR][1000 genomes]
rs422209	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs452964	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58503998	0.86[ASN][1000 genomes]
rs72670106	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72670114	0.90[ASN][1000 genomes]
rs72670117	0.86[ASN][1000 genomes]
rs72670118	0.86[ASN][1000 genomes]
rs7330996	0.90[ASN][1000 genomes]
rs8000582	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8000641	0.90[ASN][1000 genomes]
rs9555645	0.83[JPT][hapmap]
rs9555646	0.84[JPT][hapmap]
rs9555647	0.83[JPT][hapmap]
rs9555649	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9555650	0.87[ASN][1000 genomes]
rs9555651	0.86[ASN][1000 genomes]
rs9555653	0.85[ASN][1000 genomes]
rs9555654	0.85[ASN][1000 genomes]
rs9559672	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559673	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559676	0.89[ASN][1000 genomes]
rs9559677	0.85[ASN][1000 genomes]
rs9588040	0.86[ASN][1000 genomes]
rs9634587	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9634589	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9634590	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110566800-110590400	Weak transcription	Aorta	Aorta
2	chr13:110571000-110586000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110574800-110581200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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