Variant report

Variant	rs58503998
Chromosome Location	chr13:110593300-110593301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1333982	0.86[EUR][1000 genomes]
rs1333987	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56296105	0.84[EUR][1000 genomes]
rs72652006	0.84[EUR][1000 genomes]
rs72652007	0.83[EUR][1000 genomes]
rs72652014	0.83[EUR][1000 genomes]
rs72670114	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72670117	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72670118	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72670125	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72670128	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72670134	0.86[EUR][1000 genomes]
rs72670135	0.86[EUR][1000 genomes]
rs72670137	0.84[EUR][1000 genomes]
rs7330996	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7332564	0.83[EUR][1000 genomes]
rs7999512	0.83[EUR][1000 genomes]
rs8000641	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs915017	0.80[EUR][1000 genomes]
rs915018	0.87[EUR][1000 genomes]
rs9555650	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9555651	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9555653	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9555654	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9555658	0.84[EUR][1000 genomes]
rs9555659	0.83[EUR][1000 genomes]
rs9555660	0.84[EUR][1000 genomes]
rs9559676	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9559677	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9559679	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559681	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559688	0.86[EUR][1000 genomes]
rs9559691	0.86[EUR][1000 genomes]
rs9559693	0.84[EUR][1000 genomes]
rs9559694	0.84[EUR][1000 genomes]
rs9559695	0.84[EUR][1000 genomes]
rs9559696	0.84[EUR][1000 genomes]
rs9559697	0.84[EUR][1000 genomes]
rs9559698	0.84[EUR][1000 genomes]
rs9559700	0.84[EUR][1000 genomes]
rs9559701	0.84[EUR][1000 genomes]
rs9559705	0.83[EUR][1000 genomes]
rs9559706	0.83[EUR][1000 genomes]
rs9559707	0.83[EUR][1000 genomes]
rs9588040	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989064	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110591000-110593800	Weak transcription	NHEK	skin
2	chr13:110591400-110593800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110591400-110596400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:110591600-110594000	Weak transcription	NHDF-Ad	bronchial
5	chr13:110592200-110593400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:110592600-110594600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:110593000-110594000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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