Variant report

Variant	rs915017
Chromosome Location	chr13:110629778-110629779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1333982	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1333987	0.86[EUR][1000 genomes]
rs56296105	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58503998	0.80[EUR][1000 genomes]
rs72652006	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72652007	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72652014	0.90[EUR][1000 genomes]
rs72670114	0.85[EUR][1000 genomes]
rs72670117	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72670118	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72670125	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72670128	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72670134	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72670135	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72670137	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7330996	0.85[EUR][1000 genomes]
rs7332564	0.90[EUR][1000 genomes]
rs7999512	0.90[EUR][1000 genomes]
rs8000641	0.85[EUR][1000 genomes]
rs915018	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9555653	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9555654	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9555658	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9555659	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9555660	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559676	0.85[EUR][1000 genomes]
rs9559677	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9559679	0.89[EUR][1000 genomes]
rs9559681	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559688	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559691	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9559693	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559694	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559695	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559696	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559697	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559698	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559700	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559701	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9559705	0.90[EUR][1000 genomes]
rs9559706	0.90[EUR][1000 genomes]
rs9559707	0.90[EUR][1000 genomes]
rs9588040	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110624000-110631800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:110626200-110631600	Weak transcription	Fetal Brain Male	brain
3	chr13:110628000-110629800	Enhancers	Fetal Heart	heart
4	chr13:110628200-110630400	Enhancers	Fetal Thymus	thymus
5	chr13:110629200-110630000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links