Variant report

Variant	rs9559705
Chromosome Location	chr13:110657790-110657791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110437517..110439697-chr13:110657006..110658602,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1333982	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1333987	0.88[EUR][1000 genomes]
rs56296105	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58503998	0.83[EUR][1000 genomes]
rs72652006	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72652007	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72652014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670114	0.87[EUR][1000 genomes]
rs72670117	0.91[EUR][1000 genomes]
rs72670118	0.91[EUR][1000 genomes]
rs72670125	0.91[EUR][1000 genomes]
rs72670128	0.91[EUR][1000 genomes]
rs72670134	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72670135	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72670137	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7330996	0.87[EUR][1000 genomes]
rs7332564	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7999512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8000641	0.87[EUR][1000 genomes]
rs915017	0.90[EUR][1000 genomes]
rs915018	0.95[EUR][1000 genomes]
rs9555650	0.82[EUR][1000 genomes]
rs9555651	0.82[EUR][1000 genomes]
rs9555653	0.91[EUR][1000 genomes]
rs9555654	0.91[EUR][1000 genomes]
rs9555658	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9555659	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9555660	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559676	0.87[EUR][1000 genomes]
rs9559677	0.91[EUR][1000 genomes]
rs9559679	0.91[EUR][1000 genomes]
rs9559681	0.89[EUR][1000 genomes]
rs9559688	0.96[EUR][1000 genomes]
rs9559691	0.96[EUR][1000 genomes]
rs9559693	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9559694	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9559695	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9559696	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9559697	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9559698	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559700	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9559701	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9559706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9559707	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9559708	0.86[ASN][1000 genomes]
rs9588040	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110651600-110658000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:110651800-110662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:110652600-110658000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:110653600-110663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:110654000-110664000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:110654400-110657800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:110654400-110657800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:110654600-110658000	Weak transcription	NHEK	skin
9	chr13:110654600-110658200	Weak transcription	NH-A	brain
10	chr13:110654800-110657800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:110654800-110658600	Weak transcription	Osteobl	bone
12	chr13:110654800-110658800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:110655000-110657800	Weak transcription	Hela-S3	cervix
14	chr13:110655000-110658400	Weak transcription	A549	lung
15	chr13:110655000-110658600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:110655000-110662800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:110655400-110657800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:110655400-110658000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:110657200-110659200	Enhancers	HSMM	muscle
20	chr13:110657200-110659600	Enhancers	HMEC	breast
21	chr13:110657400-110658400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:110657400-110659000	Enhancers	NHDF-Ad	bronchial

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