Variant report

Variant	rs9559677
Chromosome Location	chr13:110594784-110594785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110593467..110595333-chr13:110598630..110600263,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1333982	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1333987	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56296105	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58503998	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72652006	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72652007	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72652014	0.91[EUR][1000 genomes]
rs72670114	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72670117	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670118	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670125	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72670128	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72670134	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72670135	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72670137	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7330996	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7332564	0.91[EUR][1000 genomes]
rs7999512	0.91[EUR][1000 genomes]
rs8000641	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs915017	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs915018	0.94[EUR][1000 genomes]
rs9555650	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9555651	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9555653	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9555654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9555658	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9555659	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9555660	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559676	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9559679	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9559681	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9559688	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9559691	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9559693	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559694	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559695	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559696	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559697	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559698	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559700	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559701	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9559705	0.91[EUR][1000 genomes]
rs9559706	0.91[EUR][1000 genomes]
rs9559707	0.91[EUR][1000 genomes]
rs9588040	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989064	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110591400-110596400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110593800-110595200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110594000-110595200	Enhancers	NHDF-Ad	bronchial
4	chr13:110594600-110595200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:110594600-110597400	Weak transcription	Muscle Satellite Cultured Cells	--

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