Variant report

Variant	rs16822697
Chromosome Location	chr2:182993567-182993568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10497590	1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[AFR][1000 genomes]
rs12623909	0.83[ASN][1000 genomes]
rs1515896	0.80[ASN][1000 genomes]
rs17648206	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs17648779	0.80[ASN][1000 genomes]
rs3754930	1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[AFR][1000 genomes]
rs55920192	0.80[ASN][1000 genomes]
rs56851890	0.86[ASN][1000 genomes]
rs6433955	0.80[ASN][1000 genomes]
rs6705911	0.82[ASN][1000 genomes]
rs6714982	0.80[ASN][1000 genomes]
rs6735443	0.80[ASN][1000 genomes]
rs72893179	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus
2	chr2:182993200-182993600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:182993200-182993800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:182993200-182995200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:182993200-182995600	Enhancers	Hela-S3	cervix
6	chr2:182993400-182993600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:182993400-182993600	Enhancers	Osteobl	bone
8	chr2:182993400-182994400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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