Variant report

Variant	rs17648779
Chromosome Location	chr2:182972124-182972125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182971673..182974149-chr2:182975000..182977579,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12623909	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1432515	0.80[MEX][hapmap]
rs1432520	0.82[CHD][hapmap]
rs1432521	0.82[CHD][hapmap]
rs1515896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822697	0.83[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs17366198	0.82[CHD][hapmap]
rs17457004	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17594497	0.83[TSI][hapmap]
rs1864847	0.82[CHD][hapmap]
rs1997445	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2128045	0.82[CHD][hapmap]
rs2163696	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2170402	0.82[CHD][hapmap]
rs2170403	0.82[CHD][hapmap]
rs2217615	0.83[AMR][1000 genomes]
rs2568664	0.82[CHD][hapmap]
rs2568667	0.82[CHD][hapmap]
rs2623422	0.88[CHD][hapmap]
rs2623423	0.88[CHD][hapmap]
rs300885	0.88[CHD][hapmap]
rs3754929	0.82[CHD][hapmap]
rs4666812	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55920192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56851890	0.94[ASN][1000 genomes]
rs58353107	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61011072	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6433955	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433956	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6705911	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6707201	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6714982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735443	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67360849	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72893179	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7420606	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7589989	0.80[MEX][hapmap]
rs833140	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus

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