Variant report
| Variant | rs2163696 |
|---|---|
| Chromosome Location | chr2:182990703-182990704 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:182943387..182944241-chr2:182990575..182991501,3 | MCF-7 | breast: | |
| 2 | chr2:182754959..182757996-chr2:182990661..182994349,5 | MCF-7 | breast: | |
| 3 | chr2:182884188..182888119-chr2:182990048..182995139,6 | MCF-7 | breast: | |
| 4 | chr2:182759840..182761573-chr2:182989686..182991505,2 | MCF-7 | breast: | |
| 5 | chr2:182817707..182819677-chr2:182989420..182992160,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138434 | Chromatin interaction |
| ENSG00000260742 | Chromatin interaction |
| ENSG00000150722 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12623909 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1515896 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17457004 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17648779 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17649281 | 0.83[EUR][1000 genomes] |
| rs1997445 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2217615 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4666812 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55920192 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs58353107 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61011072 | 0.86[EUR][1000 genomes] |
| rs6433955 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6433956 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6705911 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6707201 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6714982 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6735443 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs67360849 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72893179 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7420606 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875477 | chr2:182938377-183086478 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv875478 | chr2:182960289-182998122 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:182966800-182996400 | Weak transcription | Fetal Thymus | thymus |
