Variant report

Variant	rs4666812
Chromosome Location	chr2:182991374-182991375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182943646..182944243-chr2:182990884..182991578,2	MCF-7	breast:
2	chr2:182608371..182610484-chr2:182990865..182992753,2	MCF-7	breast:
3	chr2:182943387..182944241-chr2:182990575..182991501,3	MCF-7	breast:
4	chr2:182940136..182945901-chr2:182990915..182998605,17	MCF-7	breast:
5	chr2:182780940..182782752-chr2:182991340..182994211,2	MCF-7	breast:
6	chr2:182756103..182758959-chr2:182990801..182994027,3	MCF-7	breast:
7	chr2:182754959..182757996-chr2:182990661..182994349,5	MCF-7	breast:
8	chr2:182948523..182950628-chr2:182991331..182993046,3	MCF-7	breast:
9	chr2:182884188..182888119-chr2:182990048..182995139,6	MCF-7	breast:
10	chr2:182759840..182761573-chr2:182989686..182991505,2	MCF-7	breast:
11	chr2:182817707..182819677-chr2:182989420..182992160,2	MCF-7	breast:
12	chr2:182943249..182944272-chr2:182991017..182991773,5	MCF-7	breast:
13	chr2:182941653..182947128-chr2:182990854..182994247,10	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12623909	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1515896	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17457004	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17648779	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1997445	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2163696	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217615	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55920192	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58353107	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61011072	0.81[EUR][1000 genomes]
rs6433955	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6433956	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6705911	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6707201	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714982	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6735443	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67360849	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72893179	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7420606	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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