Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12623909	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1515896	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17457004	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17648779	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17649281	0.82[EUR][1000 genomes]
rs1997445	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2163696	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2217615	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4666812	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55920192	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58353107	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61011072	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6433955	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6433956	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6705911	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6707201	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6714982	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6735443	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72893179	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7420606	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182954200-182968200	Weak transcription	Psoas Muscle	Psoas
2	chr2:182958200-182969800	Weak transcription	Thymus	Thymus
3	chr2:182962400-182967600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:182965800-182968600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:182966600-182968200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:182966600-182970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:182966800-182968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:182966800-182968200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus

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