Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1070197	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167284	1.00[ASN][1000 genomes]
rs16822777	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822784	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822795	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822803	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822812	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822843	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822918	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822938	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2568683	0.87[EUR][1000 genomes]
rs2568684	0.87[EUR][1000 genomes]
rs2568686	0.87[EUR][1000 genomes]
rs2623421	0.81[EUR][1000 genomes]
rs300888	0.87[EUR][1000 genomes]
rs711807	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032449	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036255	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833130	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833134	1.00[ASN][1000 genomes]
rs833138	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833139	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833157	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183048400-183073000	Weak transcription	Fetal Stomach	stomach
2	chr2:183060800-183067200	Weak transcription	Fetal Brain Female	brain
3	chr2:183061000-183085000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:183062800-183067000	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:183064200-183066400	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:183064200-183067000	Weak transcription	Right Ventricle	heart
7	chr2:183065000-183065800	Strong transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:183065000-183066200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:183065000-183066600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:183065000-183067000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:183065000-183067600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:183065200-183065800	Strong transcription	Aorta	Aorta
13	chr2:183065200-183066000	Strong transcription	Primary hematopoietic stem cells	blood

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