Variant report

Variant	rs16822918
Chromosome Location	chr2:183104501-183104502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183103040..183104711-chr2:183106820..183108898,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1070197	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383899	0.81[EUR][1000 genomes]
rs167284	1.00[ASN][1000 genomes]
rs16822777	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822784	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822795	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822803	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822812	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822843	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822851	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822938	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842640	0.81[EUR][1000 genomes]
rs1967008	0.81[EUR][1000 genomes]
rs2438290	0.81[EUR][1000 genomes]
rs2568683	0.94[EUR][1000 genomes]
rs2568684	0.94[EUR][1000 genomes]
rs2568686	0.94[EUR][1000 genomes]
rs2623421	0.88[EUR][1000 genomes]
rs300888	0.94[EUR][1000 genomes]
rs711807	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032449	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036255	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833130	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833134	1.00[ASN][1000 genomes]
rs833138	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833139	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833143	0.81[EUR][1000 genomes]
rs833157	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833160	0.81[EUR][1000 genomes]
rs833161	0.81[EUR][1000 genomes]
rs866732	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1805452	chr2:183086478-183107270	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1809585	chr2:183086478-183107270	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183088000-183105800	Weak transcription	Aorta	Aorta
2	chr2:183088000-183106000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:183095800-183106000	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:183098200-183105800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:183099400-183107200	Weak transcription	Fetal Brain Male	brain
6	chr2:183100600-183105800	Weak transcription	Right Ventricle	heart
7	chr2:183102400-183105000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:183102600-183105800	Weak transcription	Fetal Stomach	stomach
9	chr2:183103000-183105000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:183103600-183104600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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