Variant report

Variant	rs16823319
Chromosome Location	chr2:183361476-183361477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10180347	1.00[EUR][1000 genomes]
rs10497596	1.00[EUR][1000 genomes]
rs11884145	1.00[EUR][1000 genomes]
rs11887150	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11888602	1.00[EUR][1000 genomes]
rs11891405	1.00[EUR][1000 genomes]
rs11891890	1.00[EUR][1000 genomes]
rs11892984	1.00[EUR][1000 genomes]
rs11893859	1.00[EUR][1000 genomes]
rs11897675	1.00[EUR][1000 genomes]
rs11899043	1.00[EUR][1000 genomes]
rs11900878	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11902391	1.00[EUR][1000 genomes]
rs11903131	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11903253	1.00[EUR][1000 genomes]
rs13422439	1.00[EUR][1000 genomes]
rs1405945	1.00[EUR][1000 genomes]
rs16823120	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16823144	1.00[EUR][1000 genomes]
rs16823168	1.00[EUR][1000 genomes]
rs16823171	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16823184	1.00[EUR][1000 genomes]
rs16823199	1.00[EUR][1000 genomes]
rs16823220	1.00[EUR][1000 genomes]
rs16823249	1.00[EUR][1000 genomes]
rs16823277	1.00[EUR][1000 genomes]
rs16823398	1.00[EUR][1000 genomes]
rs2368296	0.92[YRI][hapmap]
rs34384812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34558843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35196240	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36105371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4420678	1.00[EUR][1000 genomes]
rs4621137	1.00[EUR][1000 genomes]
rs4666586	0.91[YRI][hapmap]
rs4666844	0.96[YRI][hapmap]
rs57267003	1.00[EUR][1000 genomes]
rs57829961	1.00[EUR][1000 genomes]
rs58580997	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61069172	1.00[EUR][1000 genomes]
rs6724256	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6725460	1.00[EUR][1000 genomes]
rs6731573	1.00[EUR][1000 genomes]
rs6752224	1.00[EUR][1000 genomes]
rs6761101	1.00[EUR][1000 genomes]
rs73042483	1.00[EUR][1000 genomes]
rs73044426	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045406	1.00[EUR][1000 genomes]
rs73045415	1.00[EUR][1000 genomes]
rs73045418	1.00[EUR][1000 genomes]
rs73045422	1.00[EUR][1000 genomes]
rs73045434	1.00[EUR][1000 genomes]
rs73048386	1.00[EUR][1000 genomes]
rs73050409	1.00[EUR][1000 genomes]
rs73975018	1.00[EUR][1000 genomes]
rs7562805	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7576178	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581210	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7601239	1.00[EUR][1000 genomes]
rs825654	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs991927	1.00[EUR][1000 genomes]
rs994155	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183355000-183364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:183361000-183361600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:183361000-183362200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:183361200-183361600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:183361200-183361600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:183361200-183361800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:183361200-183362200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:183361200-183362200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:183361200-183362200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:183361200-183362200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:183361400-183361600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:183361400-183361600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:183361400-183361600	Enhancers	Gastric	stomach

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