Variant report

Variant	rs7576178
Chromosome Location	chr2:183408391-183408392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183407157..183409269-chr2:183412477..183414356,2	K562	blood:
2	chr2:183406601..183409032-chr2:183409704..183411675,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10180347	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10497596	1.00[EUR][1000 genomes]
rs11884145	1.00[EUR][1000 genomes]
rs11887150	0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11888602	1.00[EUR][1000 genomes]
rs11891405	1.00[EUR][1000 genomes]
rs11891890	1.00[EUR][1000 genomes]
rs11892984	1.00[EUR][1000 genomes]
rs11893859	1.00[EUR][1000 genomes]
rs11897675	1.00[EUR][1000 genomes]
rs11899043	1.00[EUR][1000 genomes]
rs11900878	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11902391	1.00[EUR][1000 genomes]
rs11903131	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11903253	1.00[EUR][1000 genomes]
rs13422439	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405945	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16823120	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16823144	1.00[EUR][1000 genomes]
rs16823168	1.00[EUR][1000 genomes]
rs16823171	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16823184	1.00[EUR][1000 genomes]
rs16823199	1.00[EUR][1000 genomes]
rs16823220	1.00[EUR][1000 genomes]
rs16823249	1.00[EUR][1000 genomes]
rs16823277	1.00[EUR][1000 genomes]
rs16823319	1.00[MEX][hapmap];0.80[MKK][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16823398	1.00[EUR][1000 genomes]
rs34384812	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34558843	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35196240	1.00[EUR][1000 genomes]
rs36105371	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4420678	1.00[EUR][1000 genomes]
rs4621137	1.00[EUR][1000 genomes]
rs57267003	1.00[EUR][1000 genomes]
rs57829961	1.00[EUR][1000 genomes]
rs58580997	0.90[AMR][1000 genomes]
rs61069172	1.00[EUR][1000 genomes]
rs6724256	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6725460	1.00[EUR][1000 genomes]
rs6731573	1.00[EUR][1000 genomes]
rs6752224	1.00[EUR][1000 genomes]
rs6761101	1.00[EUR][1000 genomes]
rs73042483	1.00[EUR][1000 genomes]
rs73044426	0.81[AMR][1000 genomes]
rs73045406	1.00[EUR][1000 genomes]
rs73045415	1.00[EUR][1000 genomes]
rs73045418	1.00[EUR][1000 genomes]
rs73045422	1.00[EUR][1000 genomes]
rs73045434	1.00[EUR][1000 genomes]
rs73048386	1.00[EUR][1000 genomes]
rs73050409	1.00[EUR][1000 genomes]
rs73975018	1.00[EUR][1000 genomes]
rs7562805	0.81[AMR][1000 genomes]
rs7581210	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7601239	1.00[EUR][1000 genomes]
rs825654	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs991927	1.00[EUR][1000 genomes]
rs994155	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183404200-183411800	Weak transcription	Fetal Brain Male	brain
2	chr2:183407400-183413800	Enhancers	HUVEC	blood vessel
3	chr2:183407600-183408400	Enhancers	HSMM	muscle
4	chr2:183407800-183408400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:183407800-183408400	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:183407800-183408800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:183407800-183412800	Weak transcription	Fetal Lung	lung
8	chr2:183407800-183413200	Weak transcription	NHLF	lung
9	chr2:183408000-183412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:183408000-183412800	Weak transcription	Osteobl	bone
11	chr2:183408200-183409400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:183408200-183409800	Weak transcription	HSMMtube	muscle

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