Variant report

Variant	rs58580997
Chromosome Location	chr2:183366745-183366746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11887150	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13422439	0.80[AMR][1000 genomes]
rs16823319	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs34384812	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs34558843	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs35196240	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs36105371	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73044426	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7562805	0.91[AMR][1000 genomes]
rs7576178	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183364400-183366800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:183364800-183368000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:183365000-183368200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:183365000-183369000	Weak transcription	NHLF	lung
6	chr2:183365400-183366800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:183365600-183368600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:183365600-183368600	Weak transcription	Osteobl	bone
9	chr2:183365600-183369400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:183365600-183371400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:183365800-183368600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:183366000-183368400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:183366200-183370600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:183366400-183366800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr2:183366600-183368200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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