Variant report

Variant	rs16823740
Chromosome Location	chr1:184983617-184983618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1008502	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs1046592	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10489580	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10489581	1.00[CEU][hapmap]
rs10737256	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs10797997	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10797998	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10797999	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10798000	0.81[CHB][hapmap]
rs10911673	0.88[ASN][1000 genomes]
rs10911676	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10911682	0.83[ASN][1000 genomes]
rs12027607	0.92[EUR][1000 genomes]
rs12028809	1.00[CEU][hapmap]
rs12030554	0.83[JPT][hapmap]
rs12035073	1.00[CEU][hapmap]
rs12037692	1.00[CEU][hapmap]
rs12040650	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12043427	1.00[CEU][hapmap]
rs12043495	1.00[CEU][hapmap]
rs12043617	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12044161	1.00[CEU][hapmap]
rs12046095	0.82[CEU][hapmap]
rs12046801	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12049293	0.81[AMR][1000 genomes]
rs12064938	0.92[EUR][1000 genomes]
rs12086086	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12094983	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12404187	0.81[CHB][hapmap]
rs12404644	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12408279	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12409926	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1322646	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1407554	1.00[CEU][hapmap]
rs1407555	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1407557	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1544052	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1884447	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2057222	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2146329	0.81[CHB][hapmap]
rs3766720	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3766723	1.00[CEU][hapmap]
rs3806243	1.00[CEU][hapmap]
rs41264588	0.83[ASN][1000 genomes]
rs6424971	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs6424972	0.81[CHB][hapmap]
rs6700484	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs72739677	0.92[EUR][1000 genomes]
rs72739679	0.92[EUR][1000 genomes]
rs72739693	0.88[ASN][1000 genomes]
rs72739698	0.88[ASN][1000 genomes]
rs7512290	0.81[CHB][hapmap]
rs7519019	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7533198	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv525731	chr1:184812165-185038104	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv872585	chr1:184813885-184986725	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv872587	chr1:184820832-184986725	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184983600-184984800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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