The 2.0 version of rSNPBase

Variant report

Variant rs12049293
Chromosome Location chr1:185039930-185039931
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:185015800-185043400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:185016400-185057000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:185016400-185067200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:185016400-185073800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:185016600-185057000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:185017400-185042800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:185018400-185043000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr1:185018400-185043200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:185018400-185101800 Weak transcription Fetal Brain Male brain
10 chr1:185020600-185040200 Weak transcription Brain Angular Gyrus brain
11 chr1:185021600-185057200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:185024200-185044000 Weak transcription Fetal Stomach stomach
13 chr1:185024200-185056600 Weak transcription Primary T cells fromperipheralblood blood
14 chr1:185027200-185056400 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr1:185027200-185056400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:185027400-185040000 Weak transcription H1 Cell Line embryonic stem cell
17 chr1:185028200-185058200 Weak transcription Brain Substantia Nigra brain
18 chr1:185028800-185043400 Weak transcription Small Intestine intestine
19 chr1:185029600-185042600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr1:185030200-185041200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:185030200-185076600 Weak transcription Gastric stomach
22 chr1:185031200-185044000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:185031200-185044400 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr1:185032200-185057800 Weak transcription Primary B cells from peripheral blood blood
25 chr1:185032400-185041000 Weak transcription Liver Liver
26 chr1:185032400-185042400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:185032400-185044000 Weak transcription Muscle Satellite Cultured Cells --
28 chr1:185032800-185056600 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr1:185033000-185040400 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr1:185033200-185040400 Weak transcription Monocytes-CD14+_RO01746 blood
31 chr1:185033200-185044000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:185034200-185043400 Weak transcription A549 lung
33 chr1:185034400-185044000 Weak transcription Fetal Intestine Small intestine
34 chr1:185034800-185044600 Weak transcription Lung lung
35 chr1:185034800-185057400 Weak transcription Fetal Brain Female brain
36 chr1:185034800-185077000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:185035000-185040400 Weak transcription Fetal Muscle Trunk muscle
38 chr1:185035000-185044600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:185035000-185056600 Weak transcription Fetal Muscle Leg muscle
40 chr1:185035000-185058000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:185035200-185056600 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr1:185035400-185040200 Weak transcription Primary monocytes fromperipheralblood blood
43 chr1:185035400-185043000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr1:185035400-185057000 Weak transcription Fetal Intestine Large intestine
45 chr1:185035600-185040400 Weak transcription H9 Cell Line embryonic stem cell
46 chr1:185035800-185052600 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr1:185035800-185056400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:185035800-185057800 Weak transcription Fetal Lung lung
49 chr1:185036000-185040400 Weak transcription Primary hematopoietic stem cells short term culture blood
50 chr1:185036000-185056600 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015