The 2.0 version of rSNPBase

Variant report

Variant rs12041374
Chromosome Location chr1:185118066-185118067
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:185056200-185124200 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr1:185059000-185124800 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:185082600-185125400 Weak transcription Spleen Spleen
4 chr1:185084200-185124400 Weak transcription Right Ventricle heart
5 chr1:185085000-185121400 Weak transcription NHEK skin
6 chr1:185085400-185125000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:185086000-185120200 Strong transcription Primary neutrophils fromperipheralblood blood
8 chr1:185087000-185125000 Weak transcription Gastric stomach
9 chr1:185088200-185120600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr1:185089400-185124400 Weak transcription Colonic Mucosa Colon
11 chr1:185089600-185121400 Weak transcription Stomach Mucosa stomach
12 chr1:185091200-185121400 Weak transcription Fetal Heart heart
13 chr1:185094200-185118400 Weak transcription H1 Cell Line embryonic stem cell
14 chr1:185096600-185121400 Weak transcription Hela-S3 cervix
15 chr1:185101000-185121000 Strong transcription Primary monocytes fromperipheralblood blood
16 chr1:185101600-185125200 Weak transcription Esophagus oesophagus
17 chr1:185101800-185120200 Strong transcription Adipose Nuclei Adipose
18 chr1:185101800-185120800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:185102000-185120800 Strong transcription Placenta Placenta
20 chr1:185102400-185120600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:185102400-185121400 Weak transcription HMEC breast
22 chr1:185102400-185124400 Weak transcription Brain Germinal Matrix brain
23 chr1:185102600-185124400 Weak transcription Fetal Brain Male brain
24 chr1:185102600-185124400 Weak transcription Small Intestine intestine
25 chr1:185102800-185121200 Strong transcription Monocytes-CD14+_RO01746 blood
26 chr1:185102800-185125000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr1:185103000-185121400 Weak transcription Aorta Aorta
28 chr1:185103000-185124400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:185103200-185121000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:185103200-185121000 Weak transcription HSMMtube muscle
31 chr1:185103400-185123600 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr1:185103600-185123800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:185103600-185124400 Weak transcription Brain Substantia Nigra brain
34 chr1:185104200-185123000 Weak transcription HepG2 liver
35 chr1:185104600-185125000 Weak transcription Pancreas Pancrea
36 chr1:185105200-185120400 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr1:185105600-185118400 Weak transcription Thymus Thymus
38 chr1:185105600-185125200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr1:185105600-185125200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:185105600-185125200 Weak transcription Lung lung
41 chr1:185106000-185124400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr1:185106200-185123400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr1:185106600-185118600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:185106600-185120800 Strong transcription Primary B cells from cord blood blood
45 chr1:185108000-185120000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:185108000-185120200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:185108000-185120800 Strong transcription Primary B cells from peripheral blood blood
48 chr1:185108200-185120600 Strong transcription Skeletal Muscle Female skeletal muscle
49 chr1:185108400-185120800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr1:185108400-185120800 Strong transcription Liver Liver

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Last update: Aug 31, 2015