Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155390004..155392407-chr3:155396683..155399623,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13326969	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16825208	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16825229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17411990	0.92[CEU][hapmap]
rs1850847	0.84[CEU][hapmap]
rs4680197	0.84[CEU][hapmap]
rs4680202	0.84[CEU][hapmap]
rs56007034	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62286076	0.84[EUR][1000 genomes]
rs6795967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6807243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6807368	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925967	0.84[CEU][hapmap]
rs932207	0.85[CEU][hapmap]
rs9814642	0.84[CEU][hapmap]
rs9823723	0.84[CEU][hapmap]
rs9829178	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9866635	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9870721	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155394600-155400000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:155394800-155399400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:155394800-155399400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:155395000-155399000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:155395000-155399600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:155395000-155400000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:155395000-155400200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:155395200-155399200	Weak transcription	Fetal Intestine Large	intestine
10	chr3:155395200-155399600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:155395200-155412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:155396200-155399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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